Variant report

Variant	rs533332
Chromosome Location	chr7:105429800-105429801
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:105416753..105418699-chr7:105427328..105430037,2	MCF-7	breast:
2	chr7:105418693..105422569-chr7:105427730..105430708,5	MCF-7	breast:
3	chr7:105427810..105430751-chr7:105453985..105456543,2	MCF-7	breast:
4	chr7:105425456..105428881-chr7:105429219..105433069,3	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs510382	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6950432	1.00[AMR][1000 genomes]
rs6958203	1.00[AMR][1000 genomes]
rs6964480	1.00[AMR][1000 genomes]
rs6977858	1.00[AMR][1000 genomes]
rs7786261	1.00[AMR][1000 genomes]
rs7793664	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966729	chr7:105429482-105434138	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105359800-105438600	Weak transcription	Pancreas	Pancrea
2	chr7:105384600-105438600	Weak transcription	Spleen	Spleen
3	chr7:105385000-105434800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr7:105389000-105432400	Weak transcription	Esophagus	oesophagus
5	chr7:105400600-105438400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr7:105400800-105436800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr7:105411200-105435400	Weak transcription	Right Atrium	heart
8	chr7:105414400-105432800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr7:105414800-105443600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr7:105416800-105433800	Weak transcription	Brain Angular Gyrus	brain
11	chr7:105417200-105441800	Weak transcription	HepG2	liver
12	chr7:105417400-105439200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr7:105417800-105430000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr7:105418000-105435400	Weak transcription	Brain Substantia Nigra	brain
15	chr7:105418200-105432400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr7:105418200-105440600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr7:105418400-105435400	Weak transcription	Right Ventricle	heart
18	chr7:105418400-105436000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr7:105418400-105439200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:105418400-105446400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr7:105418600-105431600	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr7:105418600-105435000	Weak transcription	Liver	Liver
23	chr7:105418600-105435200	Weak transcription	Rectal Smooth Muscle	rectum
24	chr7:105420600-105435400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr7:105420800-105439600	Weak transcription	Psoas Muscle	Psoas
26	chr7:105421200-105437200	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr7:105421600-105435000	Weak transcription	Fetal Lung	lung
28	chr7:105421600-105435600	Weak transcription	Brain Cingulate Gyrus	brain
29	chr7:105422000-105452000	Weak transcription	Colonic Mucosa	Colon
30	chr7:105423000-105435200	Weak transcription	Small Intestine	intestine
31	chr7:105423200-105432600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr7:105423200-105440400	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr7:105423400-105437600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr7:105423600-105432800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr7:105424000-105433400	Weak transcription	HUVEC	blood vessel
36	chr7:105424000-105434600	Weak transcription	NHLF	lung
37	chr7:105424000-105435000	Weak transcription	Osteobl	bone
38	chr7:105424400-105430200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr7:105424400-105430400	Strong transcription	Fetal Stomach	stomach
40	chr7:105424600-105433200	Strong transcription	Fetal Intestine Small	intestine
41	chr7:105424800-105429800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr7:105425000-105432200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr7:105425000-105437400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr7:105425400-105435400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr7:105426400-105435400	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr7:105426400-105440800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr7:105427000-105430200	Strong transcription	Aorta	Aorta
48	chr7:105427000-105435200	Weak transcription	Fetal Brain Male	brain
49	chr7:105427400-105430200	Enhancers	Placenta	Placenta
50	chr7:105427600-105430200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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