Variant report

Variant	rs533480330
Chromosome Location	chr13:87377590-87377591
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:45)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:45 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr13:87377407-87377759	H1-hESC	embryonic stem cell:	n/a	n/a
2	RAD21	chr13:87377345-87377677	SK-N-SH_RA	brain:	n/a	n/a
3	CTCF	chr13:87377480-87377630	AG04450	lung:	n/a	n/a
4	RAD21	chr13:87377328-87377751	H1-hESC	embryonic stem cell:	n/a	n/a
5	CTCF	chr13:87377440-87377590	HMF	breast:	n/a	n/a
6	CTCF	chr13:87377549-87377600	GM12891	blood:	n/a	n/a
7	WRNIP1	chr13:87377569-87377683	GM12878	blood:	n/a	n/a
8	CTCF	chr13:87377540-87377690	GM12874	blood:	n/a	n/a
9	CTCF	chr13:87377462-87377658	H1-hESC	embryonic stem cell:	n/a	n/a
10	CTCF	chr13:87377460-87377610	RPTEC	kidney:	n/a	n/a
11	RAD21	chr13:87377323-87377699	SK-N-SH_RA	brain:	n/a	n/a
12	CTCF	chr13:87377500-87377650	HCPEpiC	choroid plexus:	n/a	n/a
13	CTCF	chr13:87377540-87377690	BE2_C	brain:	n/a	n/a
14	CTCF	chr13:87377493-87377653	Gliobla	brain:	n/a	n/a
15	CTCF	chr13:87377460-87377610	HA-sp	spinal cord:	n/a	n/a
16	CTCF	chr13:87377459-87377669	Medullo	brain:	n/a	n/a
17	RAD21	chr13:87377413-87377694	HepG2	liver:	n/a	n/a
18	CTCF	chr13:87377540-87377690	HPF	lung:	n/a	n/a
19	CTCF	chr13:87377345-87377645	H1-hESC	embryonic stem cell:	n/a	n/a
20	CTCF	chr13:87377409-87377730	GM12878	blood:	n/a	n/a
21	CTCF	chr13:87377500-87377617	HepG2	liver:	n/a	n/a
22	CTCF	chr13:87377500-87377650	WERI-Rb-1	eye:	n/a	n/a
23	RAD21	chr13:87377182-87377844	SK-N-SH	brain:	n/a	n/a
24	CTCF	chr13:87377440-87377590	HAc	cerebellar:	n/a	n/a
25	CTCF	chr13:87377480-87377630	HCPEpiC	choroid plexus:	n/a	n/a
26	CTCF	chr13:87377459-87377648	SK-N-SH_RA	brain:	n/a	n/a
27	CTCF	chr13:87377460-87377610	HCT-116	colon:	n/a	n/a
28	CTCF	chr13:87377480-87377630	BE2_C	brain:	n/a	n/a
29	RAD21	chr13:87377286-87377747	H1-hESC	embryonic stem cell:	n/a	n/a
30	CTCF	chr13:87377500-87377650	HBMEC	blood vessel:	n/a	n/a
31	CTCF	chr13:87377483-87377625	Hela-S3	cervix:	n/a	n/a
32	CTCF	chr13:87377460-87377610	SK-N-SH_RA	brain:	n/a	n/a
33	CTCF	chr13:87377358-87377761	SK-N-SH	brain:	n/a	n/a
34	CTCF	chr13:87377440-87377590	HEK293	kidney:	n/a	n/a
35	CTCF	chr13:87377520-87377670	HRPEpiC	eye:	n/a	n/a
36	CTCF	chr13:87377531-87377611	MCF-7	breast:	n/a	n/a
37	SMC3	chr13:87377298-87377879	SK-N-SH	brain:	n/a	n/a
38	CTCF	chr13:87377459-87377625	SK-N-SH_RA	brain:	n/a	n/a
39	CTCF	chr13:87377500-87377650	HepG2	liver:	n/a	n/a
40	SMC3	chr13:87377489-87377604	GM12878	blood:	n/a	n/a
41	CTCF	chr13:87377480-87377630	Hela-S3	cervix:	n/a	n/a
42	CTCF	chr13:87377500-87377650	GM12866	blood:	n/a	n/a
43	RAD21	chr13:87377323-87377689	HepG2	liver:	n/a	n/a
44	CTCF	chr13:87377500-87377650	AG09319	gingival:	n/a	n/a
45	SMC3	chr13:87377499-87377696	Hela-S3	cervix:	n/a	n/a

No data

Variant related genes	Relation type
TXNL1P1	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047136	chr13:86979109-87555131	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv900763	chr13:87073397-87658986	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv900773	chr13:87159109-87463100	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv562621	chr13:87192747-87927450	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1038179	chr13:87199973-87391741	Active TSS Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv2753866	chr13:87260025-87495281	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1052214	chr13:87283152-87428272	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv562624	chr13:87304859-87496155	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv900775	chr13:87311967-87658986	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1045701	chr13:87335640-87436713	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv3396494	chr13:87358000-87398086	Enhancers Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv3372753	chr13:87366000-87398086	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv3323042	chr13:87374000-87398086	Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	esv3398570	chr13:87376035-87392952	Inactive region	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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