Variant report

Variant	rs533512138
Chromosome Location	chr3:145616628-145616629
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877584	chr3:144903957-145833232	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv3379945	chr3:145351163-145679850	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv877610	chr3:145465395-145653627	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2751980	chr3:145473020-145758194	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1013475	chr3:145478985-145750509	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1010509	chr3:145478985-145757483	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1005624	chr3:145486437-145750509	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv999344	chr3:145506353-145750883	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv536757	chr3:145506353-145750883	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	esv33307	chr3:145506383-145667833	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv877611	chr3:145525989-145653627	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv877612	chr3:145542558-145653627	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv525829	chr3:145614317-145863779	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
14	esv2757015	chr3:145615852-145661771	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	esv2759186	chr3:145615852-145661771	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145615000-145621000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:145615800-145617000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr3:145615800-145617000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr3:145615800-145617200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:145615800-145617400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr3:145615800-145617400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr3:145616000-145616800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr3:145616000-145616800	Flanking Active TSS	Osteobl	bone
9	chr3:145616000-145617000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:145616000-145617600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr3:145616200-145616800	Active TSS	Brain Hippocampus Middle	brain
12	chr3:145616200-145617000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:145616200-145617000	Enhancers	Adipose Nuclei	Adipose
14	chr3:145616200-145617000	Active TSS	Stomach Smooth Muscle	stomach
15	chr3:145616200-145617000	Flanking Active TSS	Hela-S3	cervix
16	chr3:145616400-145616800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:145616400-145616800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr3:145616400-145616800	Enhancers	HSMM	muscle
19	chr3:145616400-145617000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr3:145616400-145617000	Active TSS	Colon Smooth Muscle	Colon
21	chr3:145616600-145617000	Enhancers	H9 Cell Line	embryonic stem cell
22	chr3:145616600-145617000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr3:145616600-145617000	Enhancers	NH-A	brain
24	chr3:145616600-145617000	Enhancers	NHDF-Ad	bronchial
25	chr3:145616600-145617200	Enhancers	Muscle Satellite Cultured Cells	--
26	chr3:145616600-145617400	Enhancers	HSMMtube	muscle
27	chr3:145616600-145618200	Weak transcription	Rectal Smooth Muscle	rectum
28	chr3:145616600-145621000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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