Variant report

Variant	rs533581535
Chromosome Location	chr8:110268216-110268217
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:110266910..110269823-chr8:110274098..110276440,2	MCF-7	breast:
2	chr8:110267160..110271575-chr8:110275719..110280785,4	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023204	chr8:110169573-110303085	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1031663	chr8:110177432-110303085	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv891273	chr8:110219735-110475874	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv891274	chr8:110224047-110308776	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv891275	chr8:110224047-110319234	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv891276	chr8:110232329-110308776	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv891277	chr8:110251998-110300579	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv891278	chr8:110251998-110308776	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	nsv515589	chr8:110268104-110300579	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	nsv891279	chr8:110268104-110450092	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110211200-110311600	Weak transcription	Right Ventricle	heart
2	chr8:110235400-110271400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr8:110235400-110275000	Weak transcription	Fetal Brain Male	brain
4	chr8:110236200-110308800	Weak transcription	Thymus	Thymus
5	chr8:110236200-110309200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr8:110236600-110344200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr8:110237000-110283800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr8:110237200-110271400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr8:110237800-110271400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr8:110238000-110311600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr8:110238200-110286600	Weak transcription	Ovary	ovary
12	chr8:110239600-110274400	Weak transcription	Pancreas	Pancrea
13	chr8:110240400-110274800	Weak transcription	Small Intestine	intestine
14	chr8:110241800-110295600	Weak transcription	Psoas Muscle	Psoas
15	chr8:110242000-110274400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr8:110242000-110274600	Weak transcription	HSMMtube	muscle
17	chr8:110242000-110283600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr8:110242200-110274400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr8:110242200-110289800	Weak transcription	Colonic Mucosa	Colon
20	chr8:110242400-110274200	Weak transcription	NH-A	brain
21	chr8:110242400-110274400	Weak transcription	Gastric	stomach
22	chr8:110242400-110282800	Weak transcription	A549	lung
23	chr8:110242400-110305000	Weak transcription	NHLF	lung
24	chr8:110242600-110291200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr8:110242800-110285000	Weak transcription	Esophagus	oesophagus
26	chr8:110243200-110291000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr8:110244600-110280600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr8:110244800-110274600	Weak transcription	NHEK	skin
29	chr8:110245600-110274400	Weak transcription	Fetal Stomach	stomach
30	chr8:110247000-110311400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr8:110249200-110291600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr8:110249600-110274400	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr8:110252400-110283000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr8:110252400-110286600	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr8:110252400-110304800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr8:110252800-110299600	Weak transcription	Fetal Kidney	kidney
37	chr8:110255600-110274400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr8:110255600-110275400	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr8:110255600-110283600	Weak transcription	K562	blood
40	chr8:110255600-110291200	Weak transcription	Fetal Thymus	thymus
41	chr8:110255600-110305400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr8:110256000-110282600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr8:110256200-110271200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr8:110256200-110274200	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr8:110256200-110274400	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr8:110256200-110275400	Weak transcription	HepG2	liver
47	chr8:110256600-110281400	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr8:110256600-110284800	Weak transcription	Brain Germinal Matrix	brain
49	chr8:110256800-110282800	Weak transcription	Hela-S3	cervix
50	chr8:110257000-110283000	Weak transcription	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links