Variant report

Variant	rs533726421
Chromosome Location	chr3:88050563-88050564
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877146	chr3:87983962-88159835	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
2	nsv536635	chr3:88049304-88088520	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88046800-88054400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr3:88048600-88054200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr3:88049800-88050600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:88049800-88050600	Active TSS	Brain Anterior Caudate	brain
5	chr3:88049800-88050600	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr3:88049800-88050600	Active TSS	Brain Substantia Nigra	brain
7	chr3:88049800-88050600	Active TSS	Duodenum Smooth Muscle	Duodenum
8	chr3:88049800-88050600	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr3:88050000-88050600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:88050000-88050600	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:88050000-88050600	Active TSS	Primary T helper cells PMA-I stimulated	--
12	chr3:88050000-88050600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:88050000-88050600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:88050000-88050600	Active TSS	Aorta	Aorta
15	chr3:88050000-88050600	Active TSS	Brain Angular Gyrus	brain
16	chr3:88050000-88050600	Active TSS	Brain Cingulate Gyrus	brain
17	chr3:88050000-88050600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
18	chr3:88050000-88050600	Active TSS	Colon Smooth Muscle	Colon
19	chr3:88050000-88050600	Active TSS	Skeletal Muscle Female	skeletal muscle
20	chr3:88050000-88050600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr3:88050000-88050600	Bivalent/Poised TSS	NHDF-Ad	bronchial
22	chr3:88050000-88050600	Bivalent/Poised TSS	NHEK	skin
23	chr3:88050000-88050600	Active TSS	NHLF	lung
24	chr3:88050000-88050800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr3:88050400-88050600	Active TSS	Primary monocytes fromperipheralblood	blood
26	chr3:88050400-88050600	Enhancers	Primary hematopoietic stem cells	blood
27	chr3:88050400-88050600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr3:88050400-88050600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr3:88050400-88050600	Active TSS	Adipose Nuclei	Adipose
30	chr3:88050400-88050600	Active TSS	Duodenum Mucosa	Duodenum
31	chr3:88050400-88050600	Flanking Active TSS	Osteobl	bone
32	chr3:88050400-88052400	Weak transcription	Liver	Liver
33	chr3:88050400-88054200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr3:88050400-88054400	Weak transcription	Primary T helper cells fromperipheralblood	blood

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