Variant report

Variant	rs533978590
Chromosome Location	chr11:55904829-55904830
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:55904782-55904832	AG04450	lung:	fetal
2	chr11:55904782-55904832	CMK	blood:	n/a
3	chr11:55904782-55904832	AG04449	skin:	fetal
4	chr11:55904782-55904832	PANC-1	pancreas:	n/a
5	chr11:55904782-55904832	SK-N-SH_RA	brain:	n/a
6	chr11:55904782-55904832	NH-A	brain:	n/a
7	chr11:55904782-55904832	T-47D	breast:	n/a
8	chr11:55904782-55904832	HMEC	breast:	n/a
9	chr11:55904782-55904832	BE2_C	brain:	n/a
10	chr11:55904782-55904832	Caco-2	colon:	n/a
11	chr11:55904782-55904832	SK-N-SH	brain:	n/a
12	chr11:55904782-55904832	Hela-S3	cervix:	n/a
13	chr11:55904782-55904832	HEEpiC	esophagus:	n/a
14	chr11:55904782-55904832	HUVEC	blood vessel:	n/a
15	chr11:55904782-55904832	HPAEpiC	pulmonary alveolar:	n/a
16	chr11:55904782-55904832	A549	lung:	n/a
17	chr11:55904782-55904832	SAEC	small airway:	n/a
18	chr11:55904782-55904832	HCM	heart:	n/a
19	chr11:55904782-55904832	LNCaP	prostate:	n/a
20	chr11:55904782-55904832	HRPEpiC	eye:	n/a
21	chr11:55904782-55904832	GM12878	blood:	n/a
22	chr11:55904782-55904832	MCF-7	breast:	n/a
23	chr11:55904782-55904832	NB4	blood:	n/a
24	chr11:55904782-55904832	MCF10A-Er-Src	breast:	n/a
25	chr11:55904782-55904832	GM12891	blood:	n/a
26	chr11:55904782-55904832	PrEC	prostate:	n/a
27	chr11:55904782-55904832	AG09319	gingival:	n/a
28	chr11:55904782-55904832	ProgFib	skin:	n/a
29	chr11:55904782-55904832	AG09309	skin:	n/a
30	chr11:55904782-55904832	HepG2	liver:	n/a
31	chr11:55904782-55904832	HRCEpiC	kidney:	n/a
32	chr11:55904782-55904832	HCPEpiC	choroid plexus:	n/a
33	chr11:55904782-55904832	AG10803	skin:	n/a
34	chr11:55904782-55904832	HEK293	kidney:	embryo
35	chr11:55904782-55904832	ECC-1	luminal epithelium:	n/a
36	chr11:55904782-55904832	HCF	heart:	n/a
37	chr11:55904782-55904832	BJ	skin:	n/a
38	chr11:55904782-55904832	SKMC	muscle:	n/a
39	chr11:55904782-55904832	RPTEC	kidney:	n/a
40	chr11:55904782-55904832	Jurkat	blood:	n/a
41	chr11:55904782-55904832	NHBE	bronchial:	n/a
42	chr11:55904782-55904832	HCT-116	colon:	n/a
43	chr11:55904782-55904832	U87	brain:	n/a
44	chr11:55904782-55904832	H1-hESC	embryonic stem cell:	embryo
45	chr11:55904782-55904832	SK-N-MC	brain:	n/a
46	chr11:55904782-55904832	AoSMC	blood vessel:	n/a
47	chr11:55904782-55904832	PFSK-1	brain:	n/a
48	chr11:55904782-55904832	ovcar-3	ovarian:	n/a
49	chr11:55904782-55904832	HIPEpiC	eye:	n/a
50	chr11:55904782-55904832	GM12892	blood:	n/a

No data

Variant related genes	Relation type
OR5BN1P	CpG island

Extended variants
information (count: 20 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067779	chr11:55086995-55980406	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
2	nsv491694	chr11:55086995-55980406	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
3	nsv1036666	chr11:55460788-56010187	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
4	nsv1049004	chr11:55460788-56014767	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	esv2830217	chr11:55460788-56017908	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
6	nsv1043441	chr11:55468512-56010187	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
7	esv2752628	chr11:55682604-55948184	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv975114	chr11:55751535-56124251	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
9	nsv521440	chr11:55763943-56052521	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
10	nsv832160	chr11:55780185-55916798	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
11	nsv949437	chr11:55780469-56042980	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
12	nsv1036290	chr11:55807948-55934985	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
13	esv2754280	chr11:55823576-55927591	Flanking Active TSS Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
14	nsv468575	chr11:55847945-55937954	Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
15	nsv555095	chr11:55847945-55937954	Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
16	nsv1039279	chr11:55900482-56008437	Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
17	nsv541045	chr11:55900482-56008437	Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
18	nsv1044859	chr11:55900482-56121727	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
19	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
20	nsv972029	chr11:55904655-55905468	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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