Variant report

Variant	rs534098939
Chromosome Location	chr1:67043467-67043468
allele	-/GTGTGTGTGTGTGTGTGT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013351	chr1:67039730-67055937	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1003016	chr1:67043120-67067119	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67040200-67044200	Enhancers	Fetal Heart	heart
2	chr1:67040600-67044200	Enhancers	NHLF	lung
3	chr1:67040800-67044000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr1:67040800-67044800	Enhancers	NHDF-Ad	bronchial
5	chr1:67041400-67043600	Enhancers	Brain Hippocampus Middle	brain
6	chr1:67041400-67044200	Enhancers	NH-A	brain
7	chr1:67041400-67045600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:67041600-67043600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:67041600-67043600	Enhancers	Brain Substantia Nigra	brain
10	chr1:67041600-67062400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr1:67042000-67044000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:67042000-67045800	Enhancers	Primary hematopoietic stem cells	blood
13	chr1:67042000-67046200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr1:67042000-67046400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr1:67042200-67045000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:67042400-67043600	Enhancers	Brain Cingulate Gyrus	brain
17	chr1:67042400-67044200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr1:67042600-67043600	Enhancers	Fetal Brain Male	brain
19	chr1:67042600-67044800	Enhancers	Osteobl	bone
20	chr1:67042800-67044400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr1:67042800-67044400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr1:67043000-67046600	Weak transcription	Small Intestine	intestine
23	chr1:67043200-67043600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr1:67043200-67043600	Weak transcription	NHEK	skin
25	chr1:67043200-67047600	Weak transcription	Fetal Lung	lung
26	chr1:67043200-67052000	Weak transcription	Brain Angular Gyrus	brain
27	chr1:67043200-67056800	Weak transcription	Brain Anterior Caudate	brain
28	chr1:67043200-67064400	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr1:67043400-67044000	Enhancers	Aorta	Aorta
30	chr1:67043400-67045000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr1:67043400-67045000	Enhancers	Muscle Satellite Cultured Cells	--
32	chr1:67043400-67056200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links