Variant report

Variant	rs534218608
Chromosome Location	chr6:64445081-64445082
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830674	chr6:64355412-64535801	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1022376	chr6:64386826-64445195	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv969307	chr6:64445020-64468321	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64424200-64450400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:64436800-64445400	Weak transcription	Primary T cells from cord blood	blood
3	chr6:64437400-64459600	Weak transcription	Aorta	Aorta
4	chr6:64442000-64451800	Weak transcription	Fetal Intestine Small	intestine
5	chr6:64442000-64451800	Weak transcription	Small Intestine	intestine
6	chr6:64442400-64445400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:64442400-64450200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:64443800-64449200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:64444600-64445200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:64444600-64445200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:64444600-64445200	Enhancers	HMEC	breast
12	chr6:64444600-64445200	Enhancers	NHEK	skin
13	chr6:64444600-64445600	Enhancers	Hela-S3	cervix
14	chr6:64444800-64448600	Weak transcription	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links