Variant report

Variant	rs534357187
Chromosome Location	chr4:87779395-87779396
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1013308	chr4:87769694-87870168	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv508297	chr4:87778783-87868508	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87771600-87785600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr4:87776200-87779600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:87776400-87779600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:87778000-87779800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
5	chr4:87778200-87779600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
6	chr4:87778800-87779600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:87778800-87780600	Weak transcription	Fetal Intestine Large	intestine
8	chr4:87779000-87779400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr4:87779000-87779600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
10	chr4:87779000-87779600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
11	chr4:87779000-87779800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr4:87779200-87779600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
13	chr4:87779200-87779600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
14	chr4:87779200-87779800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr4:87779200-87798400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links