The 2.0 version of rSNPBase

Variant report

Variant rs534409
Chromosome Location chr1:93436742-93436743
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:93428200-93438400 Weak transcription Brain Angular Gyrus brain
2 chr1:93428400-93438200 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr1:93428400-93445800 Weak transcription Rectal Mucosa Donor 31 rectum
4 chr1:93428600-93436800 Weak transcription NHEK skin
5 chr1:93429200-93438200 Weak transcription Rectal Mucosa Donor 29 rectum
6 chr1:93431200-93437800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
7 chr1:93431600-93437600 Weak transcription Dnd41 blood
8 chr1:93431600-93438600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
9 chr1:93431600-93438600 Weak transcription Thymus Thymus
10 chr1:93433200-93445000 Enhancers Primary B cells from cord blood blood
11 chr1:93433600-93439200 Enhancers Fetal Heart heart
12 chr1:93433800-93438200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
13 chr1:93433800-93438200 Weak transcription H9 Cell Line embryonic stem cell
14 chr1:93433800-93438200 Weak transcription Placenta Placenta
15 chr1:93434000-93437600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
16 chr1:93434000-93437600 Weak transcription Primary T cells fromperipheralblood blood
17 chr1:93434000-93438000 Weak transcription iPS-20b Cell Line embryonic stem cell
18 chr1:93434000-93438200 Weak transcription Brain Substantia Nigra brain
19 chr1:93434000-93439400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
20 chr1:93434200-93437800 Weak transcription K562 blood
21 chr1:93434200-93438000 Weak transcription Primary T helper cells fromperipheralblood blood
22 chr1:93434200-93438200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
23 chr1:93434200-93438200 Weak transcription Brain Anterior Caudate brain
24 chr1:93434200-93438200 Weak transcription Brain Hippocampus Middle brain
25 chr1:93434200-93438200 Weak transcription Fetal Adrenal Gland Adrenal Gland
26 chr1:93434200-93445600 Weak transcription Primary T killer naive cells fromperipheralblood blood
27 chr1:93434600-93437800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
28 chr1:93434600-93438000 Weak transcription Primary T helper naive cells from peripheral blood blood
29 chr1:93434600-93438000 Weak transcription Primary T helper naive cells fromperipheralblood blood
30 chr1:93434600-93438000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
31 chr1:93434600-93438200 Weak transcription Primary T killer memory cells from peripheral blood blood
32 chr1:93434800-93438000 Weak transcription Primary T helper cells PMA-I stimulated --
33 chr1:93435200-93437800 Weak transcription Primary hematopoietic stem cells blood
34 chr1:93435200-93438000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
35 chr1:93435400-93440600 Enhancers Primary B cells from peripheral blood blood
36 chr1:93435600-93437800 Weak transcription Primary T cells from cord blood blood
37 chr1:93435600-93438200 Weak transcription Skeletal Muscle Male skeletal muscle
38 chr1:93435800-93437600 Weak transcription GM12878-XiMat blood
39 chr1:93435800-93438600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
40 chr1:93436000-93437000 Weak transcription Primary monocytes fromperipheralblood blood
41 chr1:93436000-93437200 Weak transcription Monocytes-CD14+_RO01746 blood
42 chr1:93436200-93441800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
43 chr1:93436600-93436800 Enhancers Right Atrium heart
44 chr1:93436600-93436800 Enhancers Right Ventricle heart
45 chr1:93436600-93437000 Enhancers Fetal Intestine Small intestine
46 chr1:93436600-93437000 Enhancers Skeletal Muscle Female skeletal muscle
47 chr1:93436600-93437400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
48 chr1:93436600-93440600 Weak transcription Pancreas Pancrea

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Last update: Aug 31, 2015