Variant report

Variant	rs534725995
Chromosome Location	chr5:118289325-118289326
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882767	chr5:117931730-118385691	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv1017548	chr5:118276479-118358394	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1015878	chr5:118288904-118414706	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv537881	chr5:118288904-118414706	Active TSS Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118225400-118300400	Weak transcription	Primary B cells from cord blood	blood
2	chr5:118250400-118289400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr5:118259600-118305000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr5:118260600-118289400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr5:118263000-118306000	Weak transcription	Primary T cells from cord blood	blood
6	chr5:118263400-118304000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr5:118270400-118291800	Weak transcription	Fetal Intestine Large	intestine
8	chr5:118273600-118295400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:118282200-118304200	Weak transcription	Right Atrium	heart
10	chr5:118287400-118289400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr5:118288200-118289600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr5:118288200-118290200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr5:118288400-118289600	Enhancers	H1 Cell Line	embryonic stem cell
14	chr5:118288400-118290000	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr5:118288400-118300000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr5:118288600-118289800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr5:118288800-118289400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr5:118288800-118289600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr5:118288800-118289800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr5:118288800-118289800	Enhancers	H9 Cell Line	embryonic stem cell
21	chr5:118289000-118289800	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr5:118289200-118289800	Enhancers	Psoas Muscle	Psoas

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