Variant report

Variant	rs534785878
Chromosome Location	chr18:25299914-25299915
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833604	chr18:25226727-25417423	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv521603	chr18:25299829-25309414	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25296800-25300000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr18:25296800-25300000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr18:25297800-25300000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr18:25299000-25303000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr18:25299000-25303600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr18:25299200-25303200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr18:25299200-25303400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr18:25299200-25303600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr18:25299400-25300000	Enhancers	H9 Cell Line	embryonic stem cell
10	chr18:25299600-25303400	Weak transcription	HUES6 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links