Variant report

Variant	rs535248352
Chromosome Location	chr2:173939491-173939492
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000091436	TF binding region
ENSG00000091428	Chromatin interaction
ENSG00000236391	Chromatin interaction
ENSG00000144354	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011724	chr2:173916482-174231908	Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv834460	chr2:173919464-174085288	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3371931	chr2:173938506-173943004	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173934000-173940000	Weak transcription	Pancreas	Pancrea
2	chr2:173935600-173939800	Weak transcription	Fetal Lung	lung
3	chr2:173936000-173940000	Weak transcription	Right Atrium	heart
4	chr2:173937200-173939600	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr2:173937800-173940000	Weak transcription	Aorta	Aorta
6	chr2:173938400-173940000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr2:173938600-173939600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr2:173938600-173940000	Enhancers	Left Ventricle	heart
9	chr2:173938600-173940000	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr2:173938800-173939600	Weak transcription	Psoas Muscle	Psoas
11	chr2:173938800-173940000	Weak transcription	Liver	Liver
12	chr2:173938800-173940200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr2:173938800-173940400	Enhancers	Fetal Heart	heart
14	chr2:173939000-173939800	Weak transcription	K562	blood
15	chr2:173939000-173940000	Weak transcription	Ovary	ovary
16	chr2:173939400-173939800	Enhancers	GM12878-XiMat	blood
17	chr2:173939400-173940000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr2:173939400-173940000	Enhancers	Colon Smooth Muscle	Colon

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links