Variant report

Variant	rs535384175
Chromosome Location	chr10:51023033-51023034
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr10:51022919-51023136	K562	blood:	n/a	n/a
2	POLR2A	chr10:51022792-51024163	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000229870	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv2758219	chr10:50971974-51925166	Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	esv2759749	chr10:50971974-51925166	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv428232	chr10:50971974-51925166	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	nsv895379	chr10:51022933-51187793	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:51018600-51023200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:51019800-51023400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:51019800-51053400	Weak transcription	Small Intestine	intestine
4	chr10:51020000-51025200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr10:51020400-51049600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr10:51020800-51025400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr10:51021000-51023200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:51021200-51023200	Weak transcription	Primary T cells from cord blood	blood
9	chr10:51021200-51025400	Weak transcription	Aorta	Aorta
10	chr10:51021200-51025800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr10:51021200-51026800	Weak transcription	Gastric	stomach
12	chr10:51021400-51023200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:51021400-51023200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr10:51021400-51023200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr10:51021400-51023200	Weak transcription	Brain Germinal Matrix	brain
16	chr10:51021400-51023200	Weak transcription	Placenta	Placenta
17	chr10:51021400-51023200	Weak transcription	Dnd41	blood
18	chr10:51021400-51023200	Weak transcription	NH-A	brain
19	chr10:51021400-51023400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr10:51021400-51025000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr10:51021400-51025200	Weak transcription	Brain Anterior Caudate	brain
22	chr10:51021400-51025400	Weak transcription	Brain Cingulate Gyrus	brain
23	chr10:51021400-51025400	Weak transcription	Brain Hippocampus Middle	brain
24	chr10:51021400-51025600	Weak transcription	GM12878-XiMat	blood
25	chr10:51021600-51023200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr10:51021600-51023200	Weak transcription	Adipose Nuclei	Adipose
27	chr10:51021600-51023200	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr10:51021600-51023400	Weak transcription	Primary B cells from peripheral blood	blood
29	chr10:51021600-51023400	Weak transcription	Left Ventricle	heart
30	chr10:51021600-51023600	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr10:51021600-51023600	Weak transcription	A549	lung
32	chr10:51021600-51025000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr10:51021600-51025200	Weak transcription	Stomach Smooth Muscle	stomach
34	chr10:51021600-51025400	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr10:51021600-51025800	Weak transcription	Liver	Liver
36	chr10:51021800-51023400	Weak transcription	Colon Smooth Muscle	Colon
37	chr10:51021800-51024800	Weak transcription	Fetal Brain Female	brain
38	chr10:51021800-51025200	Weak transcription	Fetal Stomach	stomach
39	chr10:51021800-51025200	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr10:51021800-51025400	Weak transcription	Fetal Intestine Large	intestine
41	chr10:51021800-51025600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr10:51021800-51025600	Weak transcription	Ovary	ovary
43	chr10:51021800-51025600	Weak transcription	Thymus	Thymus
44	chr10:51021800-51032800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr10:51021800-51033400	Weak transcription	Osteobl	bone
46	chr10:51021800-51039600	Weak transcription	Psoas Muscle	Psoas
47	chr10:51022000-51023600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr10:51022000-51024000	Weak transcription	HepG2	liver
49	chr10:51022000-51025200	Weak transcription	Duodenum Mucosa	Duodenum
50	chr10:51022000-51025400	Weak transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links