Variant report

Variant	rs535413
Chromosome Location	chr11:59898111-59898112
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:59521183..59522129-chr11:59897665..59898553,3	K562	blood:
2	chr11:59589954..59591189-chr11:59897601..59898679,5	K562	blood:
3	chr11:59590238..59591135-chr11:59897588..59898633,5	MCF-7	breast:
4	chr11:59524342..59526503-chr11:59895914..59898117,2	K562	blood:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10750930	0.90[JPT][hapmap]
rs1286182	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1294440	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1303617	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1303618	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1303619	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1303620	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1303622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1315507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1441585	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2194962	0.81[JPT][hapmap]
rs2243987	0.96[EUR][1000 genomes]
rs2433240	0.92[EUR][1000 genomes]
rs2847662	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs474888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs475494	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs475812	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs477352	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs485682	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs489297	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs500886	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs500888	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs512548	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs512555	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs519743	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs523806	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs524755	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs524995	0.90[JPT][hapmap];0.96[EUR][1000 genomes]
rs528421	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs541468	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs542665	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs546840	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs548515	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs549633	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs562442	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs562637	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs569108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs571582	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs572084	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs573305	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs574060	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs574700	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs575103	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs575930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs576295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs576483	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs576616	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs578269	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs585540	0.90[JPT][hapmap]
rs587634	0.90[JPT][hapmap];0.96[EUR][1000 genomes]
rs588448	0.90[JPT][hapmap];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs590532	0.96[EUR][1000 genomes]
rs592496	0.96[EUR][1000 genomes]
rs596788	0.96[EUR][1000 genomes]
rs597982	0.96[EUR][1000 genomes]
rs598862	0.90[JPT][hapmap];0.96[EUR][1000 genomes]
rs600194	0.96[EUR][1000 genomes]
rs605820	0.96[EUR][1000 genomes]
rs60849043	1.00[ASN][1000 genomes]
rs620368	0.90[JPT][hapmap];0.96[EUR][1000 genomes]
rs624233	0.96[EUR][1000 genomes]
rs625025	0.96[EUR][1000 genomes]
rs638872	0.96[EUR][1000 genomes]
rs641051	0.88[EUR][1000 genomes]
rs641829	0.90[JPT][hapmap]
rs642426	0.96[EUR][1000 genomes]
rs646924	0.90[JPT][hapmap];0.96[EUR][1000 genomes]
rs653285	0.96[EUR][1000 genomes]
rs654443	0.85[EUR][1000 genomes]
rs661376	0.90[JPT][hapmap]
rs662674	0.90[JPT][hapmap]
rs668095	0.90[JPT][hapmap]
rs668134	0.90[JPT][hapmap]
rs670925	0.96[EUR][1000 genomes]
rs675316	0.96[EUR][1000 genomes]
rs682025	0.96[EUR][1000 genomes]
rs682739	0.96[EUR][1000 genomes]
rs684977	0.96[EUR][1000 genomes]
rs7104122	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832173	chr11:59788884-59940560	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv468579	chr11:59814287-59975400	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv555150	chr11:59814287-59975400	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59892600-59899200	Weak transcription	Fetal Intestine Large	intestine
2	chr11:59893800-59899400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr11:59895000-59899200	Weak transcription	Ovary	ovary
4	chr11:59895400-59907400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:59895800-59899200	Weak transcription	Fetal Intestine Small	intestine
6	chr11:59897400-59898200	Enhancers	Primary B cells from peripheral blood	blood
7	chr11:59897400-59898400	Enhancers	K562	blood
8	chr11:59897600-59898400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr11:59897600-59898400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr11:59897600-59898400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr11:59898000-59898200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr11:59898000-59898200	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr11:59898000-59898200	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr11:59898000-59898600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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