Variant report

Variant	rs535544580
Chromosome Location	chr3:116142398-116142399
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757886	chr3:116142130-116307542	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759171	chr3:116142130-116307542	Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116141800-116142400	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr3:116141800-116142400	Flanking Active TSS	Brain Cingulate Gyrus	brain
3	chr3:116141800-116142600	Enhancers	Duodenum Smooth Muscle	Duodenum
4	chr3:116141800-116142800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:116141800-116143200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr3:116141800-116143400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:116141800-116143400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr3:116141800-116143600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr3:116141800-116143600	Enhancers	Brain Germinal Matrix	brain
10	chr3:116141800-116143800	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr3:116142000-116142400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:116142000-116142400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr3:116142000-116142600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr3:116142000-116142800	Active TSS	Stomach Smooth Muscle	stomach
15	chr3:116142000-116143000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr3:116142000-116143000	Active TSS	Brain Inferior Temporal Lobe	brain
17	chr3:116142000-116143200	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr3:116142000-116143600	Enhancers	Rectal Smooth Muscle	rectum
19	chr3:116142000-116143800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr3:116142000-116143800	Enhancers	Fetal Lung	lung
21	chr3:116142200-116142400	Flanking Active TSS	Colon Smooth Muscle	Colon
22	chr3:116142200-116142600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr3:116142200-116142600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr3:116142200-116142600	Active TSS	Brain Angular Gyrus	brain
25	chr3:116142200-116142600	Enhancers	Fetal Brain Male	brain
26	chr3:116142200-116142800	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr3:116142200-116142800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr3:116142200-116142800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr3:116142200-116142800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chr3:116142200-116143000	Active TSS	Brain Anterior Caudate	brain
31	chr3:116142200-116143000	Active TSS	Brain Substantia Nigra	brain
32	chr3:116142200-116143200	Flanking Active TSS	Brain Hippocampus Middle	brain
33	chr3:116142200-116143800	Enhancers	Fetal Stomach	stomach
34	chr3:116142200-116144200	Enhancers	Stomach Mucosa	stomach

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