Variant report

Variant	rs535557002
Chromosome Location	chr15:58553573-58553574
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr15:58552587-58553823	Hela-S3	cervix:	n/a	n/a
2	FOS	chr15:58552468-58553585	MCF10A-Er-Src	breast:	n/a	chr15:58553397-58553408 chr15:58553396-58553403 chr15:58552677-58552686 chr15:58553396-58553404
3	STAT3	chr15:58552280-58553670	MCF10A-Er-Src	breast:	n/a	chr15:58552678-58552686 chr15:58552621-58552632 chr15:58552623-58552632 chr15:58553376-58553384 chr15:58552683-58552694 chr15:58552656-58552667 chr15:58552622-58552631
4	TFAP2A	chr15:58552622-58553827	Hela-S3	cervix:	n/a	n/a
5	STAT1	chr15:58552315-58554192	Hela-S3	cervix:	n/a	chr15:58552678-58552686 chr15:58552623-58552632 chr15:58553376-58553384 chr15:58552621-58552632 chr15:58552622-58552631
6	STAT3	chr15:58553088-58553593	Hela-S3	cervix:	n/a	chr15:58553376-58553384
7	MYC	chr15:58553010-58553691	MCF10A-Er-Src	breast:	n/a	n/a
8	RFX5	chr15:58553140-58553622	Hela-S3	cervix:	n/a	n/a
9	TFAP2C	chr15:58552527-58553997	Hela-S3	cervix:	n/a	n/a
10	FOS	chr15:58553028-58553628	MCF10A-Er-Src	breast:	n/a	chr15:58553397-58553408 chr15:58553396-58553403 chr15:58553396-58553404
11	SMC3	chr15:58552593-58553579	Hela-S3	cervix:	n/a	n/a
12	POLR2A	chr15:58550245-58553629	MCF10A-Er-Src	breast:	n/a	n/a
13	STAT3	chr15:58552377-58553634	MCF10A-Er-Src	breast:	n/a	chr15:58552678-58552686 chr15:58552621-58552632 chr15:58552623-58552632 chr15:58553376-58553384 chr15:58552683-58552694 chr15:58552656-58552667 chr15:58552622-58552631
14	MAX	chr15:58552514-58553596	Hela-S3	cervix:	n/a	n/a
15	TCF7L2	chr15:58552510-58553807	Hela-S3	cervix:	n/a	n/a
16	FOS	chr15:58552458-58553675	MCF10A-Er-Src	breast:	n/a	chr15:58553397-58553408 chr15:58553396-58553403 chr15:58552677-58552686 chr15:58553396-58553404
17	FOS	chr15:58552458-58553644	MCF10A-Er-Src	breast:	n/a	chr15:58553397-58553408 chr15:58553396-58553403 chr15:58552677-58552686 chr15:58553396-58553404
18	FOS	chr15:58552956-58553585	Hela-S3	cervix:	n/a	chr15:58553397-58553408 chr15:58553396-58553403 chr15:58553396-58553404
19	CEBPB	chr15:58552578-58553640	Hela-S3	cervix:	n/a	n/a
20	RCOR1	chr15:58553044-58553659	Hela-S3	cervix:	n/a	n/a
21	E2F4	chr15:58553263-58553640	MCF10A-Er-Src	breast:	n/a	n/a
22	MYC	chr15:58553000-58553629	MCF10A-Er-Src	breast:	n/a	n/a
23	POLR2A	chr15:58552361-58554026	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ALDH1A2	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv833024	chr15:58447459-58621963	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1050473	chr15:58479888-58562270	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv904264	chr15:58505122-58588510	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv904265	chr15:58517528-58588510	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
7	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
8	nsv529717	chr15:58519923-58756814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv1042201	chr15:58520746-58780710	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58547800-58557000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:58549600-58558600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr15:58550200-58554000	Enhancers	HMEC	breast
4	chr15:58550400-58561800	Weak transcription	Liver	Liver
5	chr15:58551000-58553600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr15:58551200-58553600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr15:58551600-58554000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr15:58551800-58554400	Enhancers	Placenta	Placenta
9	chr15:58552200-58553600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr15:58552200-58553600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr15:58552400-58553800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr15:58552400-58553800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
13	chr15:58552400-58553800	Flanking Active TSS	Hela-S3	cervix
14	chr15:58552400-58554000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr15:58552400-58554200	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr15:58552400-58554400	Enhancers	Psoas Muscle	Psoas
17	chr15:58552600-58553600	Enhancers	Placenta Amnion	Placenta Amnion
18	chr15:58552600-58553800	Enhancers	Fetal Heart	heart
19	chr15:58552600-58554000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr15:58552800-58553800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr15:58552800-58553800	Enhancers	Esophagus	oesophagus
22	chr15:58552800-58554200	Enhancers	Left Ventricle	heart
23	chr15:58553000-58553800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr15:58553000-58553800	Enhancers	NHDF-Ad	bronchial
25	chr15:58553200-58553600	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr15:58553200-58554000	Enhancers	NHEK	skin
27	chr15:58553200-58555000	Weak transcription	K562	blood
28	chr15:58553200-58562200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr15:58553400-58553800	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr15:58553400-58555600	Weak transcription	Primary T cells from cord blood	blood
31	chr15:58553400-58557000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr15:58553400-58562400	Weak transcription	Spleen	Spleen

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