Variant report

Variant	rs535939620
Chromosome Location	chr12:11036044-11036045
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758294	chr12:10969620-11714921	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	esv2759879	chr12:10969620-11714921	Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
3	esv3387486	chr12:11035980-11036746	Weak transcription Strong transcription Enhancers ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:11007000-11038800	Weak transcription	Psoas Muscle	Psoas
2	chr12:11007200-11039400	Weak transcription	Right Ventricle	heart
3	chr12:11009200-11045800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr12:11012200-11051800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr12:11012200-11055800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr12:11012200-11056200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr12:11014400-11043400	Weak transcription	Fetal Intestine Small	intestine
8	chr12:11014400-11052000	Weak transcription	Fetal Brain Male	brain
9	chr12:11020200-11045400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr12:11024800-11037600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr12:11026000-11045800	Weak transcription	Brain Germinal Matrix	brain
12	chr12:11026400-11043600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr12:11026600-11037400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr12:11028400-11053400	Weak transcription	Brain Substantia Nigra	brain
15	chr12:11028600-11038800	Weak transcription	Spleen	Spleen
16	chr12:11028600-11039200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr12:11028800-11037400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr12:11029200-11053200	Weak transcription	Fetal Brain Female	brain
19	chr12:11029600-11040600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr12:11030600-11037000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr12:11030600-11037200	Weak transcription	Placenta	Placenta
22	chr12:11030600-11038800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr12:11030600-11038800	Weak transcription	Lung	lung
24	chr12:11030600-11044200	Weak transcription	Gastric	stomach
25	chr12:11030600-11044400	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr12:11030600-11044600	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr12:11030600-11045800	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr12:11030600-11046000	Weak transcription	Fetal Muscle Leg	muscle
29	chr12:11030600-11051200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr12:11030600-11053400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr12:11030600-11053400	Weak transcription	Esophagus	oesophagus
32	chr12:11030600-11054200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr12:11030800-11040800	Weak transcription	HSMMtube	muscle
34	chr12:11030800-11043200	Weak transcription	Liver	Liver
35	chr12:11031000-11037200	Weak transcription	Fetal Lung	lung
36	chr12:11031000-11038800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr12:11031000-11043000	Weak transcription	Fetal Intestine Large	intestine
38	chr12:11031000-11044200	Weak transcription	Primary B cells from peripheral blood	blood
39	chr12:11031000-11049400	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr12:11031000-11053200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr12:11031000-11055000	Weak transcription	Primary B cells from cord blood	blood
42	chr12:11031200-11036800	Weak transcription	Aorta	Aorta
43	chr12:11031200-11041400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr12:11031200-11041400	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr12:11031200-11044600	Weak transcription	Pancreas	Pancrea
46	chr12:11031600-11045400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr12:11032000-11036200	Weak transcription	HepG2	liver
48	chr12:11032000-11038800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr12:11032000-11053800	Weak transcription	Dnd41	blood
50	chr12:11033800-11038600	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links