Variant report

Variant	rs536095043
Chromosome Location	chr6:150920409-150920410
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr6:150920140-150920991	GM12878	blood:	n/a	n/a
2	WRNIP1	chr6:150920292-150920567	GM12878	blood:	n/a	n/a
3	KAP1	chr6:150920064-150920925	HEK293	kidney:	n/a	n/a
4	BHLHE40	chr6:150920401-150921055	GM12878	blood:	n/a	n/a
5	STAT1	chr6:150920186-150920526	GM12878	blood:	n/a	n/a
6	E2F6	chr6:150920122-150920642	H1-hESC	embryonic stem cell:	n/a	chr6:150920344-150920351 chr6:150920344-150920352 chr6:150920343-150920354 chr6:150920344-150920352 chr6:150920344-150920355 chr6:150920343-150920353
7	MAZ	chr6:150920387-150921268	GM12878	blood:	n/a	chr6:150920861-150920871
8	MXI1	chr6:150920242-150920756	GM12878	blood:	n/a	n/a
9	EBF1	chr6:150920375-150920800	GM12878	blood:	n/a	n/a
10	ZNF143	chr6:150920093-150920449	GM12878	blood:	n/a	n/a
11	BATF	chr6:150920260-150920552	GM12878	blood:	n/a	n/a
12	BCL11A	chr6:150920350-150920669	GM12878	blood:	n/a	chr6:150920568-150920577
13	ESRRA	chr6:150920131-150920985	GM12878	blood:	n/a	n/a
14	EP300	chr6:150920124-150920655	GM12878	blood:	n/a	chr6:150920488-150920502

Variant related genes	Relation type
PLEKHG1	TF binding region
ENSG00000232891	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3415576	chr6:150920109-150923107	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150911800-150920800	Weak transcription	Aorta	Aorta
2	chr6:150918200-150920600	Enhancers	Sigmoid Colon	Sigmoid Colon
3	chr6:150918400-150920800	Weak transcription	Psoas Muscle	Psoas
4	chr6:150919200-150920600	Bivalent Enhancer	Fetal Intestine Large	intestine
5	chr6:150919200-150921000	Weak transcription	Spleen	Spleen
6	chr6:150920000-150920600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:150920000-150920600	Flanking Active TSS	Fetal Thymus	thymus
8	chr6:150920000-150920600	Flanking Bivalent TSS/Enh	GM12878-XiMat	blood
9	chr6:150920200-150920600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:150920200-150920600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
11	chr6:150920200-150920600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
12	chr6:150920200-150920600	Flanking Active TSS	Primary B cells from peripheral blood	blood
13	chr6:150920200-150920600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
14	chr6:150920200-150920600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:150920200-150920600	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
16	chr6:150920200-150920600	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr6:150920200-150920600	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:150920200-150920600	Bivalent Enhancer	Brain Germinal Matrix	brain
19	chr6:150920200-150920600	Weak transcription	Colonic Mucosa	Colon
20	chr6:150920200-150920600	Enhancers	Fetal Brain Male	brain
21	chr6:150920200-150920600	Bivalent/Poised TSS	NHEK	skin
22	chr6:150920200-150920800	Flanking Active TSS	Fetal Intestine Small	intestine
23	chr6:150920200-150920800	Flanking Bivalent TSS/Enh	Fetal Lung	lung
24	chr6:150920200-150920800	Enhancers	Lung	lung
25	chr6:150920200-150922400	Active TSS	Breast Myoepithelial Primary Cells	Breast
26	chr6:150920200-150922400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:150920200-150922400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr6:150920200-150922400	Active TSS	Fetal Kidney	kidney
29	chr6:150920200-150922400	Active TSS	Pancreatic Islets	Pancreatic Islet
30	chr6:150920200-150922600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
31	chr6:150920400-150920600	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
32	chr6:150920400-150920600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:150920400-150920600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr6:150920400-150920600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
35	chr6:150920400-150920600	Active TSS	Primary B cells from cord blood	blood
36	chr6:150920400-150920600	Bivalent/Poised TSS	Primary T cells from cord blood	blood
37	chr6:150920400-150920600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
38	chr6:150920400-150920600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
39	chr6:150920400-150920600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
40	chr6:150920400-150920600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr6:150920400-150920600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr6:150920400-150920600	Flanking Active TSS	Brain Anterior Caudate	brain
43	chr6:150920400-150920600	Enhancers	Brain Hippocampus Middle	brain
44	chr6:150920400-150920600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
45	chr6:150920400-150920600	Flanking Active TSS	Placenta	Placenta
46	chr6:150920400-150920600	Active TSS	Rectal Mucosa Donor 31	rectum
47	chr6:150920400-150920600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
48	chr6:150920400-150920600	Bivalent Enhancer	A549	lung
49	chr6:150920400-150920600	Bivalent Enhancer	NH-A	brain
50	chr6:150920400-150920800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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