Variant report

Variant	rs536240167
Chromosome Location	chr11:72109759-72109760
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:72108026..72111129-chr11:72112803..72115357,3	MCF-7	breast:
2	chr11:72091599..72093441-chr11:72109431..72111887,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832206	chr11:72006573-72176017	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
3	esv1000322	chr11:72109327-72116806	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72065000-72110800	Weak transcription	Hela-S3	cervix
2	chr11:72069400-72111400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr11:72090400-72123000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:72091400-72111400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr11:72091600-72119200	Weak transcription	Thymus	Thymus
6	chr11:72095200-72112800	Weak transcription	Fetal Stomach	stomach
7	chr11:72095800-72110600	Weak transcription	Dnd41	blood
8	chr11:72096200-72110600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr11:72099200-72110600	Weak transcription	HSMM	muscle
10	chr11:72099200-72110800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:72099200-72111200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:72099200-72111400	Weak transcription	HSMMtube	muscle
13	chr11:72099200-72111600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr11:72099200-72111600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr11:72099200-72112800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr11:72099200-72112800	Weak transcription	Fetal Muscle Leg	muscle
17	chr11:72099200-72112800	Weak transcription	Lung	lung
18	chr11:72099200-72115000	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr11:72099200-72115600	Weak transcription	NHDF-Ad	bronchial
20	chr11:72099200-72122800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:72099600-72125000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr11:72099600-72125000	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr11:72100200-72111400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:72100400-72117400	Weak transcription	HMEC	breast
25	chr11:72101400-72111600	Weak transcription	Gastric	stomach
26	chr11:72102000-72110800	Weak transcription	Primary hematopoietic stem cells	blood
27	chr11:72102000-72111400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:72102400-72111400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr11:72102600-72112600	Weak transcription	Fetal Intestine Small	intestine
30	chr11:72103400-72111400	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr11:72103400-72120000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:72103600-72111600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr11:72103600-72111600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr11:72103600-72116000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr11:72104000-72111000	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr11:72104200-72111400	Weak transcription	Primary B cells from peripheral blood	blood
37	chr11:72104200-72111400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr11:72104200-72111600	Weak transcription	Spleen	Spleen
39	chr11:72104200-72113600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:72104400-72111800	Weak transcription	Fetal Muscle Trunk	muscle
41	chr11:72105000-72122200	Weak transcription	GM12878-XiMat	blood
42	chr11:72105400-72124800	Weak transcription	A549	lung
43	chr11:72106000-72115800	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr11:72106200-72111600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr11:72106200-72112400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr11:72106200-72113200	Weak transcription	Psoas Muscle	Psoas
47	chr11:72106200-72113600	Weak transcription	NHEK	skin
48	chr11:72106200-72121200	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr11:72106200-72121800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr11:72106400-72111600	Weak transcription	Liver	Liver

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