Variant report

Variant	rs536517096
Chromosome Location	chr8:62199083-62199084
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr8:62199082-62199132	HRCEpiC	kidney:	n/a
2	chr8:62199082-62199132	HUVEC	blood vessel:	n/a
3	chr8:62199082-62199132	BE2_C	brain:	n/a
4	chr8:62199082-62199132	HRPEpiC	eye:	n/a
5	chr8:62199082-62199132	HMEC	breast:	n/a
6	chr8:62199082-62199132	PrEC	prostate:	n/a
7	chr8:62199082-62199132	HEK293	kidney:	embryo
8	chr8:62199082-62199132	LNCaP	prostate:	n/a
9	chr8:62199082-62199132	ovcar-3	ovarian:	n/a
10	chr8:62199082-62199132	SK-N-SH_RA	brain:	n/a
11	chr8:62199082-62199132	AG09319	gingival:	n/a
12	chr8:62199082-62199132	HEEpiC	esophagus:	n/a
13	chr8:62199082-62199132	AG04449	skin:	fetal
14	chr8:62199082-62199132	MCF10A-Er-Src	breast:	n/a
15	chr8:62199082-62199132	AoSMC	blood vessel:	n/a
16	chr8:62199082-62199132	HAEpiC	amniotic membrane:	n/a
17	chr8:62199082-62199132	ProgFib	skin:	n/a
18	chr8:62199082-62199132	HIPEpiC	eye:	n/a
19	chr8:62199082-62199132	GM19239	blood:	n/a
20	chr8:62199082-62199132	H1-hESC	embryonic stem cell:	embryo
21	chr8:62199082-62199132	Caco-2	colon:	n/a
22	chr8:62199082-62199132	SKMC	muscle:	n/a
23	chr8:62199082-62199132	AG04450	lung:	fetal
24	chr8:62199082-62199132	MCF-7	breast:	n/a
25	chr8:62199082-62199132	HCF	heart:	n/a
26	chr8:62199082-62199132	NHBE	bronchial:	n/a
27	chr8:62199082-62199132	HCM	heart:	n/a
28	chr8:62199082-62199132	GM06990	blood:	n/a
29	chr8:62199082-62199132	T-47D	breast:	n/a
30	chr8:62199082-62199132	CMK	blood:	n/a
31	chr8:62199082-62199132	AG09309	skin:	n/a
32	chr8:62199082-62199132	K562	blood:	n/a
33	chr8:62199082-62199132	NH-A	brain:	n/a
34	chr8:62199082-62199132	NHDF-neo	bronchial:	n/a
35	chr8:62199082-62199132	SAEC	small airway:	n/a
36	chr8:62199082-62199132	SK-N-SH	brain:	n/a
37	chr8:62199082-62199132	GM12891	blood:	n/a
38	chr8:62199082-62199132	PFSK-1	brain:	n/a
39	chr8:62199082-62199132	RPTEC	kidney:	n/a
40	chr8:62199082-62199132	Jurkat	blood:	n/a
41	chr8:62199082-62199132	GM12892	blood:	n/a
42	chr8:62199082-62199132	IMR90	lung:	fetal
43	chr8:62199082-62199132	HRE	kidney:	n/a
44	chr8:62199082-62199132	BJ	skin:	n/a
45	chr8:62199082-62199132	NT2-D1	testis:	n/a
46	chr8:62199082-62199132	PANC-1	pancreas:	n/a
47	chr8:62199082-62199132	HepG2	liver:	n/a
48	chr8:62199082-62199132	A549	lung:	n/a
49	chr8:62199082-62199132	NB4	blood:	n/a
50	chr8:62199082-62199132	HL-60	blood:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:62197156..62199339-chr8:62202297..62203864,2	K562	blood:

No data

Variant related genes	Relation type
CLVS1	CpG island

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv831336	chr8:62188396-62364873	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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