Variant report

Variant	rs536531030
Chromosome Location	chr15:76530559-76530560
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76528141..76530731-chr15:76535158..76537334,2	K562	blood:
2	chr15:76517592..76519912-chr15:76530461..76532455,2	K562	blood:

Variant related genes	Relation type
ENSG00000140374	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv527608	chr15:76530267-76562738	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76500600-76534800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr15:76503600-76551400	Weak transcription	Small Intestine	intestine
3	chr15:76507200-76551400	Weak transcription	Brain Hippocampus Middle	brain
4	chr15:76508400-76546000	Weak transcription	Brain Anterior Caudate	brain
5	chr15:76510000-76534600	Weak transcription	Brain Substantia Nigra	brain
6	chr15:76510200-76555400	Weak transcription	Psoas Muscle	Psoas
7	chr15:76510400-76538000	Weak transcription	HUVEC	blood vessel
8	chr15:76510400-76538200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:76510400-76555000	Weak transcription	NH-A	brain
10	chr15:76513200-76559400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr15:76513800-76551400	Weak transcription	Stomach Mucosa	stomach
12	chr15:76516400-76550600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr15:76517200-76551800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr15:76517400-76532600	Weak transcription	HSMM	muscle
15	chr15:76517400-76544600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr15:76517400-76549200	Weak transcription	Fetal Kidney	kidney
17	chr15:76517400-76550600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr15:76517400-76550600	Weak transcription	Pancreas	Pancrea
19	chr15:76517400-76559400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr15:76517600-76550600	Weak transcription	Aorta	Aorta
21	chr15:76517600-76550600	Weak transcription	Ovary	ovary
22	chr15:76517600-76551200	Weak transcription	Right Ventricle	heart
23	chr15:76517600-76551400	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr15:76517600-76553800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr15:76518200-76532400	Weak transcription	A549	lung
26	chr15:76518200-76534600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr15:76518200-76534800	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr15:76518200-76550400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr15:76518600-76538600	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr15:76520000-76535200	Weak transcription	Fetal Intestine Small	intestine
31	chr15:76520600-76532200	Weak transcription	Brain Angular Gyrus	brain
32	chr15:76521000-76534600	Weak transcription	Dnd41	blood
33	chr15:76521400-76551600	Weak transcription	Left Ventricle	heart
34	chr15:76522400-76554400	Weak transcription	Fetal Heart	heart
35	chr15:76523600-76532200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr15:76523600-76532400	Weak transcription	HSMMtube	muscle
37	chr15:76523600-76533400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr15:76523600-76533600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr15:76523600-76534600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr15:76523600-76534600	Weak transcription	Primary B cells from cord blood	blood
41	chr15:76523600-76534600	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr15:76523600-76534800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr15:76523600-76534800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr15:76523600-76535000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr15:76523600-76535000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr15:76523600-76535000	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr15:76523600-76537000	Weak transcription	Thymus	Thymus
48	chr15:76523600-76544600	Weak transcription	Lung	lung
49	chr15:76523600-76546200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr15:76523600-76546600	Weak transcription	Fetal Muscle Leg	muscle

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