Variant report

Variant	rs536558086
Chromosome Location	chr12:63229239-63229240
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:63219854..63222833-chr12:63226244..63229699,3	MCF-7	breast:
2	chr12:63222256..63224492-chr12:63227398..63230235,3	K562	blood:

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415227	chr12:63228121-63591615	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63207200-63231200	Weak transcription	Pancreas	Pancrea
2	chr12:63212600-63234600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr12:63218400-63234800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr12:63221600-63234200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr12:63222200-63235200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr12:63225400-63237600	Weak transcription	Liver	Liver
7	chr12:63225600-63231800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr12:63225800-63230200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr12:63226000-63234200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr12:63226000-63234600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr12:63226200-63240600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr12:63226400-63234000	Weak transcription	HepG2	liver
13	chr12:63227600-63231000	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr12:63227600-63237200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr12:63228000-63229400	Enhancers	Brain Hippocampus Middle	brain
16	chr12:63228200-63229400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr12:63228400-63229400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
18	chr12:63228400-63234000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr12:63228600-63234000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr12:63228600-63237600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr12:63228800-63229400	Enhancers	Brain Anterior Caudate	brain
22	chr12:63228800-63234600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr12:63228800-63242600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr12:63229000-63229400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr12:63229000-63229400	Enhancers	HSMM	muscle
26	chr12:63229000-63229400	Enhancers	NH-A	brain
27	chr12:63229000-63230000	Enhancers	Brain Angular Gyrus	brain
28	chr12:63229000-63230000	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr12:63229200-63229400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr12:63229200-63229400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr12:63229200-63229400	Enhancers	A549	lung
32	chr12:63229200-63229400	Enhancers	Osteobl	bone
33	chr12:63229200-63234000	Weak transcription	Brain Cingulate Gyrus	brain
34	chr12:63229200-63234200	Weak transcription	Brain Substantia Nigra	brain
35	chr12:63229200-63237200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr12:63229200-63242200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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