Variant report

Variant	rs536723236
Chromosome Location	chr12:40015519-40015520
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:42)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:42 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFATC1	chr12:40014971-40015659	GM12878	blood:	n/a	n/a
2	EP300	chr12:40015092-40015535	GM12878	blood:	n/a	n/a
3	POLR2A	chr12:40014891-40015599	GM12892	blood:	n/a	n/a
4	NFIC	chr12:40014951-40015639	GM12878	blood:	n/a	n/a
5	FOXM1	chr12:40014819-40015528	GM12878	blood:	n/a	n/a
6	POLR2A	chr12:40011748-40015954	GM12878	blood:	n/a	n/a
7	ATF2	chr12:40015033-40015558	GM12878	blood:	n/a	n/a
8	POLR2A	chr12:40011711-40015724	GM19193	blood:	n/a	n/a
9	POLR2A	chr12:40011618-40015633	GM12891	blood:	n/a	n/a
10	RELA	chr12:40015060-40015590	GM19099	blood:	n/a	n/a
11	BCLAF1	chr12:40015092-40015585	GM12878	blood:	n/a	n/a
12	POLR2A	chr12:40011640-40015813	GM18505	blood:	n/a	n/a
13	EP300	chr12:40015062-40015584	GM12878	blood:	n/a	n/a
14	RELA	chr12:40015009-40015700	GM19193	blood:	n/a	n/a
15	POLR2A	chr12:40011695-40015642	GM12892	blood:	n/a	n/a
16	POLR2A	chr12:40014795-40015569	GM12878	blood:	n/a	n/a
17	ZNF143	chr12:40015171-40015590	GM12878	blood:	n/a	n/a
18	RAD21	chr12:40015137-40015551	GM12878	blood:	n/a	chr12:40015423-40015437
19	MTA3	chr12:40012267-40015651	GM12878	blood:	n/a	n/a
20	BATF	chr12:40015177-40015564	GM12878	blood:	n/a	chr12:40015361-40015369
21	EBF1	chr12:40015228-40015564	GM12878	blood:	n/a	n/a
22	ZNF384	chr12:40014456-40015737	K562	blood:	n/a	n/a
23	POLR2A	chr12:40011695-40015585	GM19099	blood:	n/a	n/a
24	MAZ	chr12:40015122-40015790	GM12878	blood:	n/a	n/a
25	RELA	chr12:40014988-40015764	GM12878	blood:	n/a	n/a
26	PML	chr12:40012932-40015655	GM12878	blood:	n/a	n/a
27	RUNX3	chr12:40014932-40015577	GM12878	blood:	n/a	n/a
28	NFIC	chr12:40011603-40015858	GM12878	blood:	n/a	n/a
29	FOXM1	chr12:40014986-40015582	GM12878	blood:	n/a	n/a
30	STAT1	chr12:40015345-40015545	GM12878	blood:	n/a	n/a
31	RELA	chr12:40015024-40015661	GM18951	blood:	n/a	n/a
32	RELA	chr12:40014994-40015616	GM12891	blood:	n/a	n/a
33	ATF2	chr12:40014910-40015547	GM12878	blood:	n/a	n/a
34	CEBPB	chr12:40013272-40015600	GM12878	blood:	n/a	chr12:40013664-40013672
35	CTCF	chr12:40015167-40015539	GM12878	blood:	n/a	chr12:40015426-40015439
36	RUNX3	chr12:40014958-40015635	GM12878	blood:	n/a	n/a
37	POLR2A	chr12:40014869-40015596	GM12878	blood:	n/a	n/a
38	POLR2A	chr12:40014916-40015535	GM12891	blood:	n/a	n/a
39	RELA	chr12:40015038-40015638	GM10847	blood:	n/a	n/a
40	TBL1XR1	chr12:40015042-40015700	GM12878	blood:	n/a	n/a
41	POLR2A	chr12:40012209-40015633	GM12892	blood:	n/a	n/a
42	TBP	chr12:40012430-40016676	GM12878	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:40015362..40017426-chr12:40020461..40022505,2	MCF-7	breast:
2	chr12:40014171..40017168-chr12:40017549..40021409,3	K562	blood:
3	chr12:40010562..40012556-chr12:40014262..40016328,2	K562	blood:

No data

Variant related genes	Relation type
C12orf40	TF binding region
ABCD2	TF binding region
ENSG00000180116	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531527	chr12:39680812-40182822	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1037457	chr12:39898349-40245401	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv541480	chr12:39898349-40245401	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1039645	chr12:39903123-40022029	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv469359	chr12:39946354-40034699	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv558591	chr12:39946354-40034699	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv469361	chr12:39946354-40042220	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv558592	chr12:39946354-40042220	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv899014	chr12:39946354-40068896	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv899015	chr12:39946354-40118249	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
11	nsv899017	chr12:39949147-40081619	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
12	nsv899018	chr12:39949147-40111761	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
13	nsv899020	chr12:39985206-40040331	Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv899021	chr12:39989172-40053423	Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv899022	chr12:40014427-40111761	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40014200-40015600	Flanking Active TSS	Primary T cells from cord blood	blood
2	chr12:40014200-40015600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
3	chr12:40014200-40018800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:40014400-40015600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
5	chr12:40014800-40015600	Enhancers	K562	blood
6	chr12:40014800-40016800	Enhancers	Primary B cells from peripheral blood	blood
7	chr12:40014800-40017800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr12:40015000-40015600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
9	chr12:40015200-40016000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr12:40015200-40016200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr12:40015200-40017400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr12:40015200-40019800	Weak transcription	Brain Germinal Matrix	brain
13	chr12:40015200-40020200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr12:40015400-40015600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr12:40015400-40015600	Enhancers	Dnd41	blood
16	chr12:40015400-40016000	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr12:40015400-40016000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr12:40015400-40016000	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr12:40015400-40016800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
20	chr12:40015400-40016800	Flanking Active TSS	GM12878-XiMat	blood
21	chr12:40015400-40017400	Enhancers	Primary T cells fromperipheralblood	blood
22	chr12:40015400-40018000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr12:40015400-40018800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr12:40015400-40018800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr12:40015400-40019200	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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