Variant report

Variant	rs536838241
Chromosome Location	chr13:96509641-96509642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:96506532..96508738-chr13:96509011..96511057,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832691	chr13:96478098-96659823	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv900935	chr13:96497070-96631221	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1050430	chr13:96508530-97020734	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv541883	chr13:96508530-97020734	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96478000-96568400	Weak transcription	Placenta	Placenta
2	chr13:96487000-96510000	Weak transcription	HUVEC	blood vessel
3	chr13:96495000-96590800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr13:96498400-96549800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr13:96499400-96515400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr13:96502000-96522400	Weak transcription	Colon Smooth Muscle	Colon
7	chr13:96502400-96535400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr13:96502600-96552600	Weak transcription	Brain Germinal Matrix	brain
9	chr13:96502800-96514800	Weak transcription	Gastric	stomach
10	chr13:96502800-96562600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr13:96503000-96510600	Weak transcription	NHLF	lung
12	chr13:96503000-96517400	Weak transcription	K562	blood
13	chr13:96503000-96522600	Weak transcription	Aorta	Aorta
14	chr13:96503000-96522600	Weak transcription	Pancreas	Pancrea
15	chr13:96503000-96523600	Weak transcription	Esophagus	oesophagus
16	chr13:96503000-96526800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr13:96503000-96527200	Weak transcription	Fetal Kidney	kidney
18	chr13:96503000-96567400	Weak transcription	NHEK	skin
19	chr13:96503200-96510200	Weak transcription	Hela-S3	cervix
20	chr13:96503200-96510400	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr13:96503200-96522600	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr13:96503200-96522800	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr13:96503200-96527800	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr13:96503200-96535200	Weak transcription	HepG2	liver
25	chr13:96503200-96542000	Weak transcription	Brain Substantia Nigra	brain
26	chr13:96503200-96542000	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr13:96503200-96542200	Weak transcription	Brain Hippocampus Middle	brain
28	chr13:96503200-96558000	Weak transcription	NHDF-Ad	bronchial
29	chr13:96503200-96558200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr13:96503200-96558800	Weak transcription	Primary hematopoietic stem cells	blood
31	chr13:96503400-96520400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr13:96503400-96521800	Weak transcription	HSMMtube	muscle
33	chr13:96503400-96522600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr13:96503400-96528600	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr13:96503400-96542000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr13:96503400-96555400	Weak transcription	Fetal Heart	heart
37	chr13:96503400-96580800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr13:96503600-96510400	Weak transcription	Psoas Muscle	Psoas
39	chr13:96503600-96510400	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr13:96503600-96510600	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr13:96503600-96510600	Weak transcription	Stomach Mucosa	stomach
42	chr13:96503600-96510800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr13:96503600-96528600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr13:96503600-96528600	Weak transcription	Duodenum Mucosa	Duodenum
45	chr13:96503600-96559000	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr13:96503600-96562800	Weak transcription	Fetal Brain Female	brain
47	chr13:96503800-96510600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr13:96503800-96510800	Weak transcription	Osteobl	bone
49	chr13:96503800-96513400	Weak transcription	Fetal Stomach	stomach
50	chr13:96503800-96522600	Weak transcription	Left Ventricle	heart

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