Variant report

Variant	rs536870
Chromosome Location	chr1:155876706-155876707
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:155874110..155876772-chr1:155878394..155882215,3	MCF-7	breast:
2	chr1:155868953..155871356-chr1:155876102..155879060,2	MCF-7	breast:
3	chr1:155874036..155877922-chr1:155878278..155881350,6	K562	blood:

Variant related genes	Relation type
ENSG00000143622	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1010033	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1018730	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1055184	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10908485	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1094558	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11264421	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12039053	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12129384	0.89[AFR][1000 genomes]
rs12138833	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12747344	0.97[EUR][1000 genomes]
rs1749407	0.91[EUR][1000 genomes]
rs1749408	0.85[EUR][1000 genomes]
rs1749409	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1765275	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1964951	0.94[EUR][1000 genomes]
rs2275071	0.90[ASN][1000 genomes]
rs2275079	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2275081	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2364402	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2364404	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28379575	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2886069	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34802187	0.97[EUR][1000 genomes]
rs35138477	0.84[EUR][1000 genomes]
rs35374730	0.97[EUR][1000 genomes]
rs35588936	0.84[EUR][1000 genomes]
rs35730001	0.94[EUR][1000 genomes]
rs3738587	0.90[ASN][1000 genomes]
rs3768280	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4412586	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4661160	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4661162	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4661170	0.97[EUR][1000 genomes]
rs4661172	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs493446	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs506688	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs527113	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs572609	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs605025	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6660802	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6667096	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs708614	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71628697	0.99[EUR][1000 genomes]
rs71628699	0.85[EUR][1000 genomes]
rs822502	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs822503	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs822653	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
2	esv3423892	chr1:155664084-155901487	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv916198	chr1:155804210-156403997	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	428 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155863400-155880200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:155865200-155878600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr1:155865200-155879200	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr1:155865200-155879600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:155865600-155879200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:155865600-155879600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:155865800-155878400	Strong transcription	Primary T cells fromperipheralblood	blood
8	chr1:155865800-155878800	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr1:155865800-155879200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:155865800-155879400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:155865800-155879800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:155865800-155880000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr1:155866000-155879000	Strong transcription	Liver	Liver
14	chr1:155866000-155879200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr1:155866000-155879200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr1:155866000-155879200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr1:155866000-155879600	Strong transcription	Primary B cells from peripheral blood	blood
18	chr1:155866000-155879600	Strong transcription	Duodenum Mucosa	Duodenum
19	chr1:155866000-155879600	Strong transcription	Fetal Intestine Large	intestine
20	chr1:155866000-155879800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr1:155866000-155879800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr1:155866000-155879800	Strong transcription	Fetal Thymus	thymus
23	chr1:155866200-155879000	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr1:155866200-155879000	Strong transcription	Primary T helper cells PMA-I stimulated	--
25	chr1:155866200-155879800	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr1:155866400-155877600	Strong transcription	Skeletal Muscle Male	skeletal muscle
27	chr1:155866400-155878000	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr1:155866400-155879200	Strong transcription	Skeletal Muscle Female	skeletal muscle
29	chr1:155866400-155879600	Strong transcription	HUES6 Cell Line	embryonic stem cell
30	chr1:155866400-155879800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr1:155866600-155878400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr1:155866800-155879000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr1:155867400-155878600	Strong transcription	Dnd41	blood
34	chr1:155867400-155879800	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr1:155867400-155879800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr1:155867400-155880000	Strong transcription	H1 Cell Line	embryonic stem cell
37	chr1:155868400-155877600	Strong transcription	Rectal Mucosa Donor 31	rectum
38	chr1:155868400-155879400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr1:155868600-155879200	Strong transcription	Adipose Nuclei	Adipose
40	chr1:155868600-155879400	Strong transcription	Stomach Smooth Muscle	stomach
41	chr1:155868800-155876800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr1:155868800-155877400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr1:155868800-155878800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr1:155868800-155879400	Strong transcription	Left Ventricle	heart
45	chr1:155868800-155879800	Strong transcription	Thymus	Thymus
46	chr1:155868800-155880000	Strong transcription	Fetal Muscle Trunk	muscle
47	chr1:155869000-155877400	Strong transcription	Pancreas	Pancrea
48	chr1:155869000-155877400	Strong transcription	HSMMtube	muscle
49	chr1:155869000-155879000	Strong transcription	Placenta Amnion	Placenta Amnion
50	chr1:155869000-155879800	Strong transcription	Fetal Muscle Leg	muscle

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