Variant report

Variant	rs537497344
Chromosome Location	chr11:18098746-18098747
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:18037112..18038638-chr11:18097036..18099168,2	K562	blood:
2	chr11:18097348..18100166-chr11:18112534..18115316,2	MCF-7	breast:
3	chr11:18095890..18098789-chr11:18109246..18111081,2	K562	blood:
4	chr11:18097702..18099433-chr11:18102969..18105634,2	K562	blood:

Variant related genes	Relation type
ENSG00000166788	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv553591	chr11:18090519-18100022	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv553592	chr11:18095815-18099562	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv553593	chr11:18095815-18100022	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv553594	chr11:18095815-18100799	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv553595	chr11:18097481-18099562	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv553596	chr11:18097481-18099763	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv553597	chr11:18097481-18100022	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3479263	chr11:18097510-18100502	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv3479274	chr11:18097510-18100502	Strong transcription Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv16818	chr11:18097605-18100066	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv553598	chr11:18098635-18099330	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv553599	chr11:18098635-18099562	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv553600	chr11:18098635-18099639	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv553601	chr11:18098635-18099763	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv553602	chr11:18098635-18099827	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv553603	chr11:18098635-18099968	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv553604	chr11:18098635-18100022	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv553605	chr11:18098635-18102232	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv553606	chr11:18098635-18105302	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
21	nsv553607	chr11:18098688-18099562	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
22	nsv553608	chr11:18098688-18099639	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
23	nsv553609	chr11:18098688-18099763	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
24	nsv553610	chr11:18098688-18099968	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
25	nsv553611	chr11:18098688-18100022	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
26	nsv553612	chr11:18098688-18102232	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18070800-18102600	Weak transcription	Brain Hippocampus Middle	brain
2	chr11:18081400-18100400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr11:18083200-18109000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr11:18083400-18102400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:18084800-18108400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:18085200-18104200	Weak transcription	Fetal Intestine Small	intestine
7	chr11:18085200-18113000	Weak transcription	Fetal Brain Male	brain
8	chr11:18085600-18101000	Weak transcription	Thymus	Thymus
9	chr11:18085600-18102000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr11:18085800-18100600	Weak transcription	Fetal Kidney	kidney
11	chr11:18085800-18109600	Weak transcription	Spleen	Spleen
12	chr11:18086000-18100000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr11:18086000-18101000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr11:18086000-18105600	Weak transcription	Right Ventricle	heart
15	chr11:18086200-18100600	Weak transcription	Brain Anterior Caudate	brain
16	chr11:18086400-18107600	Weak transcription	Lung	lung
17	chr11:18086600-18100600	Weak transcription	Liver	Liver
18	chr11:18087400-18099800	Weak transcription	Dnd41	blood
19	chr11:18087400-18100600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr11:18087400-18109800	Weak transcription	Gastric	stomach
21	chr11:18087400-18115800	Weak transcription	Pancreas	Pancrea
22	chr11:18087600-18099800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr11:18087600-18100400	Weak transcription	HMEC	breast
24	chr11:18087600-18102400	Weak transcription	Brain Germinal Matrix	brain
25	chr11:18087600-18105200	Weak transcription	NHEK	skin
26	chr11:18087800-18100400	Weak transcription	Fetal Brain Female	brain
27	chr11:18087800-18100800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr11:18088200-18100800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr11:18088600-18100400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr11:18088800-18101200	Weak transcription	Ovary	ovary
31	chr11:18089200-18099800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr11:18089200-18102400	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr11:18089600-18100800	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr11:18089600-18101000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr11:18089600-18102600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr11:18089800-18099800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr11:18089800-18100400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr11:18090000-18100600	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr11:18090200-18107600	Weak transcription	Aorta	Aorta
40	chr11:18090400-18100600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr11:18090600-18100800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr11:18090800-18100600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr11:18090800-18101600	Weak transcription	GM12878-XiMat	blood
44	chr11:18091000-18100600	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr11:18091400-18100600	Weak transcription	Primary T cells from cord blood	blood
46	chr11:18091600-18101000	Weak transcription	Primary hematopoietic stem cells	blood
47	chr11:18091600-18101000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr11:18092200-18107200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr11:18092600-18102000	Weak transcription	Fetal Lung	lung
50	chr11:18092600-18102800	Weak transcription	NHLF	lung

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