Variant report

Variant	rs537553530
Chromosome Location	chr19:36730196-36730197
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:36728377..36730727-chr19:36868352..36870714,2	MCF-7	breast:
2	chr19:36729380..36732375-chr19:36732759..36734481,3	MCF-7	breast:
3	chr19:36729552..36731662-chr19:36736640..36739209,2	K562	blood:
4	chr19:36729000..36731636-chr19:36732341..36735804,4	K562	blood:
5	chr19:36730136..36732594-chr19:36734296..36737243,2	K562	blood:

Variant related genes	Relation type
ENSG00000266973	Chromatin interaction
ENSG00000196357	Chromatin interaction
ENSG00000142065	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3526489	chr19:36306483-36741945	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
2	esv3526490	chr19:36306483-36741945	Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
3	nsv520020	chr19:36721368-36822594	Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv9715	chr19:36729688-36811749	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36707400-36730200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr19:36707600-36731800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr19:36708200-36730800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr19:36710000-36732200	ZNF genes & repeats	A549	lung
5	chr19:36710000-36732200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
6	chr19:36713000-36730200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
7	chr19:36714000-36731000	Strong transcription	Dnd41	blood
8	chr19:36714400-36731400	ZNF genes & repeats	Liver	Liver
9	chr19:36715200-36731200	Strong transcription	Fetal Brain Female	brain
10	chr19:36715200-36731600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
11	chr19:36716400-36730200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr19:36716600-36731400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
13	chr19:36717000-36730200	Strong transcription	Skeletal Muscle Female	skeletal muscle
14	chr19:36718400-36731800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr19:36719200-36730800	ZNF genes & repeats	Primary T cells from cord blood	blood
16	chr19:36719400-36731400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr19:36719400-36731600	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
18	chr19:36721000-36735800	Weak transcription	Right Atrium	heart
19	chr19:36723600-36730600	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
20	chr19:36723600-36730600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr19:36724000-36730600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
22	chr19:36724000-36730600	Strong transcription	Brain Angular Gyrus	brain
23	chr19:36724400-36730600	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr19:36724400-36735800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr19:36724800-36731400	Strong transcription	Placenta	Placenta
26	chr19:36725200-36730200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr19:36725200-36730200	ZNF genes & repeats	Primary B cells from cord blood	blood
28	chr19:36725200-36730200	ZNF genes & repeats	GM12878-XiMat	blood
29	chr19:36725600-36730600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
30	chr19:36726600-36731400	ZNF genes & repeats	Fetal Muscle Leg	muscle
31	chr19:36727600-36730400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr19:36727600-36730600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr19:36728200-36730200	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr19:36728200-36730400	Strong transcription	HUVEC	blood vessel
35	chr19:36728200-36730600	Strong transcription	Ovary	ovary
36	chr19:36728200-36731200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr19:36728200-36731400	Strong transcription	Cortex derived primary cultured neurospheres	brain
38	chr19:36728200-36732000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr19:36728200-36735800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr19:36728200-36735800	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr19:36728200-36736000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr19:36728400-36730200	Strong transcription	Colon Smooth Muscle	Colon
43	chr19:36728400-36730400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr19:36728400-36730600	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr19:36728400-36730800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr19:36728400-36730800	Strong transcription	Muscle Satellite Cultured Cells	--
47	chr19:36728400-36731200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr19:36728400-36735800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr19:36728400-36735800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr19:36728400-36735800	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links