Variant report

Variant	rs537555417
Chromosome Location	chr15:76764556-76764557
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ISL2-4	chr15:76764440-76764706	NONHSAT047405

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542438	chr15:76697056-76892157	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv542439	chr15:76762161-77196336	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	nsv974602	chr15:76764286-76765752	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76711600-76767200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:76725800-76812600	Weak transcription	Left Ventricle	heart
3	chr15:76755600-76764600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr15:76757800-76765200	Weak transcription	Aorta	Aorta
5	chr15:76758400-76765600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr15:76758800-76765000	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr15:76758800-76765200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr15:76759800-76770400	Weak transcription	Colon Smooth Muscle	Colon
9	chr15:76760000-76772600	Weak transcription	GM12878-XiMat	blood
10	chr15:76760400-76773800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr15:76761200-76764800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr15:76761400-76765400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr15:76762000-76771400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr15:76762400-76765200	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr15:76762800-76764600	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr15:76762800-76765400	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr15:76762800-76765600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr15:76762800-76771200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:76763000-76764600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr15:76763000-76764600	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr15:76763000-76768200	Weak transcription	Ovary	ovary
22	chr15:76763000-76768600	Weak transcription	Primary hematopoietic stem cells	blood
23	chr15:76763000-76795000	Weak transcription	Primary B cells from cord blood	blood
24	chr15:76763200-76765000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr15:76763200-76770200	Weak transcription	Adipose Nuclei	Adipose
26	chr15:76763400-76765000	Weak transcription	Primary B cells from peripheral blood	blood
27	chr15:76763400-76765000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr15:76763400-76765000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr15:76763400-76767200	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr15:76763600-76765800	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr15:76763600-76775200	Weak transcription	Liver	Liver
32	chr15:76764000-76764600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr15:76764200-76766000	Weak transcription	Primary T cells from cord blood	blood
34	chr15:76764200-76766000	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr15:76764200-76767000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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