Variant report

Variant	rs537773552
Chromosome Location	chr2:183902712-183902713
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:183860715..183863358-chr2:183901045..183903186,2	K562	blood:
2	chr2:183897885..183903273-chr2:183986817..183992325,13	K562	blood:
3	chr2:183902160..183905711-chr2:183988105..183989833,3	MCF-7	breast:
4	chr2:183895298..183904606-chr2:183986062..183992067,16	K562	blood:
5	chr2:183886254..183889249-chr2:183902321..183904164,2	MCF-7	breast:
6	chr2:183902000..183906390-chr2:183941845..183945087,6	MCF-7	breast:
7	chr2:183901834..183904723-chr4:83350350..83352615,2	K562	blood:
8	chr2:183901739..183903655-chr2:187454012..187455892,2	MCF-7	breast:
9	chr2:183900414..183906188-chr2:183987961..183990917,10	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000145293	Chromatin interaction
ENSG00000163002	Chromatin interaction
ENSG00000152795	Chromatin interaction
ENSG00000202141	Chromatin interaction
ENSG00000162999	Chromatin interaction
ENSG00000138448	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1005281	chr2:183803173-184093877	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv875485	chr2:183827018-184195265	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1010799	chr2:183855680-184244721	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv536072	chr2:183855680-184244721	Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv1003519	chr2:183885544-184015868	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	esv3374901	chr2:183901532-183904080	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	n/a
8	esv3405975	chr2:183901932-183904480	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183899600-183903800	Active TSS	Brain Angular Gyrus	brain
2	chr2:183899600-183904200	Active TSS	Breast Myoepithelial Primary Cells	Breast
3	chr2:183899800-183903400	Active TSS	H1 Cell Line	embryonic stem cell
4	chr2:183899800-183903600	Active TSS	K562	blood
5	chr2:183899800-183903800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr2:183899800-183904000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr2:183900000-183903600	Active TSS	HMEC	breast
8	chr2:183900200-183903600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr2:183900200-183903600	Active TSS	Hela-S3	cervix
10	chr2:183900200-183903600	Active TSS	NHLF	lung
11	chr2:183900200-183903800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr2:183900200-183904000	Active TSS	Aorta	Aorta
13	chr2:183900200-183904000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr2:183900200-183904000	Active TSS	Psoas Muscle	Psoas
15	chr2:183900400-183903400	Active TSS	Skeletal Muscle Female	skeletal muscle
16	chr2:183900400-183903800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr2:183900400-183904000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr2:183900400-183904000	Active TSS	Right Ventricle	heart
19	chr2:183900600-183903400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr2:183900600-183903600	Active TSS	HUES48 Cell Line	embryonic stem cell
21	chr2:183900600-183903600	Active TSS	HUES6 Cell Line	embryonic stem cell
22	chr2:183900600-183903600	Active TSS	HSMM	muscle
23	chr2:183900600-183903600	Active TSS	HSMMtube	muscle
24	chr2:183900600-183903800	Active TSS	ES-I3 Cell Line	embryonic stem cell
25	chr2:183900600-183903800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr2:183900600-183904000	Active TSS	Brain Inferior Temporal Lobe	brain
27	chr2:183900800-183903600	Active TSS	Fetal Intestine Small	intestine
28	chr2:183900800-183903600	Active TSS	NHEK	skin
29	chr2:183900800-183903800	Active TSS	Muscle Satellite Cultured Cells	--
30	chr2:183900800-183903800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr2:183900800-183903800	Active TSS	Fetal Intestine Large	intestine
32	chr2:183900800-183904200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr2:183900800-183904200	Active TSS	Stomach Smooth Muscle	stomach
34	chr2:183901000-183903600	Active TSS	iPS-20b Cell Line	embryonic stem cell
35	chr2:183901000-183903600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
36	chr2:183901000-183903600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr2:183901000-183903800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr2:183901000-183903800	Active TSS	A549	lung
39	chr2:183901000-183904000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr2:183901000-183904000	Active TSS	Pancreatic Islets	Pancreatic Islet
41	chr2:183901000-183904200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr2:183901200-183903800	Active TSS	H9 Cell Line	embryonic stem cell
43	chr2:183901200-183903800	Active TSS	iPS-15b Cell Line	embryonic stem cell
44	chr2:183901200-183903800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr2:183901200-183903800	Active TSS	Duodenum Smooth Muscle	Duodenum
46	chr2:183901200-183903800	Active TSS	Placenta Amnion	Placenta Amnion
47	chr2:183901200-183904000	Active TSS	Colonic Mucosa	Colon
48	chr2:183901200-183904000	Active TSS	Left Ventricle	heart
49	chr2:183901400-183903400	Active TSS	iPS-18 Cell Line	embryonic stem cell
50	chr2:183901400-183903400	Active TSS	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links