Variant report

Variant	rs538106687
Chromosome Location	chr5:16935096-16935097
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:16934667..16937598-chr5:17155353..17157351,2	MCF-7	breast:
2	chr5:16913129..16917002-chr5:16934060..16938960,5	MCF-7	breast:
3	chr5:16933857..16935914-chr5:17189210..17191344,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000251990	Chromatin interaction
ENSG00000145555	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025225	chr5:16714512-17234866	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1015247	chr5:16748966-17133274	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv2762500	chr5:16815489-16952565	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
4	nsv880277	chr5:16829442-17316288	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	esv3485757	chr5:16856475-16966851	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
6	esv3485758	chr5:16856475-16966851	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
7	esv3441038	chr5:16934977-16937825	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16931800-16937000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:16932600-16935400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:16932600-16937000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr5:16932600-16937000	Active TSS	Rectal Mucosa Donor 29	rectum
5	chr5:16932600-16937200	Active TSS	HSMMtube	muscle
6	chr5:16932800-16936200	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
7	chr5:16933000-16936800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:16933000-16937400	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr5:16933200-16935200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr5:16933400-16935200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr5:16933400-16935600	Bivalent/Poised TSS	Fetal Brain Female	brain
12	chr5:16933400-16937000	Active TSS	Gastric	stomach
13	chr5:16933400-16937000	Active TSS	A549	lung
14	chr5:16933600-16935200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:16933600-16937000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr5:16933600-16937000	Active TSS	Aorta	Aorta
17	chr5:16933600-16937000	Active TSS	NHDF-Ad	bronchial
18	chr5:16933800-16935400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr5:16933800-16935400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr5:16933800-16936800	Active TSS	HUVEC	blood vessel
21	chr5:16933800-16936800	Active TSS	NH-A	brain
22	chr5:16933800-16937000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
23	chr5:16933800-16937000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr5:16933800-16937000	Active TSS	HSMM	muscle
25	chr5:16933800-16937000	Active TSS	NHLF	lung
26	chr5:16933800-16937200	Active TSS	Ovary	ovary
27	chr5:16934000-16935200	Active TSS	Cortex derived primary cultured neurospheres	brain
28	chr5:16934000-16935200	Active TSS	Right Ventricle	heart
29	chr5:16934000-16935200	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
30	chr5:16934000-16935400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr5:16934000-16935800	Active TSS	Fetal Muscle Trunk	muscle
32	chr5:16934000-16936200	Bivalent/Poised TSS	Colonic Mucosa	Colon
33	chr5:16934000-16936600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr5:16934000-16936800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr5:16934000-16937000	Active TSS	Fetal Intestine Large	intestine
36	chr5:16934000-16937000	Active TSS	Fetal Lung	lung
37	chr5:16934000-16937000	Active TSS	Lung	lung
38	chr5:16934000-16937000	Active TSS	NHEK	skin
39	chr5:16934000-16937200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr5:16934200-16935200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
41	chr5:16934200-16935200	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
42	chr5:16934200-16935400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
43	chr5:16934200-16935400	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
44	chr5:16934200-16935400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
45	chr5:16934200-16935400	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
46	chr5:16934200-16935600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
47	chr5:16934200-16935600	Flanking Active TSS	Hela-S3	cervix
48	chr5:16934200-16936800	Active TSS	Breast Myoepithelial Primary Cells	Breast
49	chr5:16934200-16936800	Active TSS	HMEC	breast
50	chr5:16934200-16937000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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