Variant report

Variant	rs538306449
Chromosome Location	chr15:76653876-76653877
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:76651115..76653988-chr15:76656127..76658474,2	MCF-7	breast:
2	chr15:76653804..76656033-chr15:76682972..76685314,2	K562	blood:
3	chr15:76601775..76604028-chr15:76652704..76655186,2	K562	blood:

Variant related genes	Relation type
ENSG00000140374	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525769	chr15:76632487-76661925	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv510667	chr15:76653359-76708310	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76639800-76659800	Weak transcription	Gastric	stomach
2	chr15:76639800-76682600	Weak transcription	Pancreas	Pancrea
3	chr15:76639800-76695400	Weak transcription	Spleen	Spleen
4	chr15:76639800-76727400	Weak transcription	Right Ventricle	heart
5	chr15:76640200-76658800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr15:76640800-76664400	Weak transcription	Brain Angular Gyrus	brain
7	chr15:76640800-76694600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr15:76641200-76659000	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr15:76641400-76694600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr15:76641600-76665400	Weak transcription	Placenta	Placenta
11	chr15:76641800-76660400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr15:76641800-76673400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr15:76642000-76660400	Weak transcription	Esophagus	oesophagus
14	chr15:76642200-76664400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr15:76642400-76660400	Weak transcription	Brain Hippocampus Middle	brain
16	chr15:76642800-76664600	Weak transcription	Thymus	Thymus
17	chr15:76642800-76693800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr15:76643800-76672400	Weak transcription	Primary B cells from cord blood	blood
19	chr15:76643800-76695000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr15:76644600-76664400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr15:76644600-76664600	Weak transcription	Fetal Muscle Trunk	muscle
22	chr15:76644800-76664600	Weak transcription	Primary B cells from peripheral blood	blood
23	chr15:76645800-76686200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr15:76646600-76664400	Weak transcription	Fetal Intestine Large	intestine
25	chr15:76646600-76695400	Weak transcription	Ovary	ovary
26	chr15:76646800-76659200	Weak transcription	Liver	Liver
27	chr15:76646800-76659400	Weak transcription	Stomach Smooth Muscle	stomach
28	chr15:76646800-76666000	Weak transcription	Fetal Brain Female	brain
29	chr15:76647000-76656000	Weak transcription	Fetal Stomach	stomach
30	chr15:76647000-76660200	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr15:76647000-76664600	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr15:76648400-76668400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr15:76648400-76674400	Weak transcription	Brain Substantia Nigra	brain
34	chr15:76648800-76659200	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr15:76649400-76659800	Weak transcription	Fetal Heart	heart
36	chr15:76650000-76660400	Weak transcription	Fetal Muscle Leg	muscle
37	chr15:76650400-76664400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr15:76650800-76674000	Weak transcription	Small Intestine	intestine
39	chr15:76651800-76659200	Weak transcription	Lung	lung
40	chr15:76652000-76658000	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr15:76652000-76660400	Weak transcription	Adipose Nuclei	Adipose
42	chr15:76652200-76655600	Weak transcription	Fetal Intestine Small	intestine
43	chr15:76652200-76656600	Weak transcription	Aorta	Aorta
44	chr15:76652400-76675200	Weak transcription	Brain Germinal Matrix	brain
45	chr15:76652600-76660400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr15:76652800-76656000	Weak transcription	Primary T cells from cord blood	blood
47	chr15:76653000-76664400	Weak transcription	Left Ventricle	heart
48	chr15:76653400-76672400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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