Variant report

Variant	rs538341026
Chromosome Location	chr2:37643194-37643195
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37636169..37638142-chr2:37642427..37644282,2	K562	blood:

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833814	chr2:37643132-37840247	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37641400-37643200	Enhancers	Muscle Satellite Cultured Cells	--
2	chr2:37641600-37643200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr2:37641600-37643200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr2:37641800-37643200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr2:37641800-37643200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr2:37641800-37643200	Enhancers	HUVEC	blood vessel
7	chr2:37641800-37643200	Enhancers	NHDF-Ad	bronchial
8	chr2:37641800-37643400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr2:37641800-37643600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr2:37641800-37643800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr2:37641800-37645600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:37642000-37643200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr2:37642000-37643400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr2:37642200-37644400	Weak transcription	NH-A	brain
15	chr2:37642200-37649000	Weak transcription	Fetal Lung	lung
16	chr2:37642400-37644200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr2:37642400-37644400	Weak transcription	HSMMtube	muscle
18	chr2:37642400-37644600	Weak transcription	Fetal Muscle Leg	muscle
19	chr2:37642400-37645600	Enhancers	Fetal Heart	heart
20	chr2:37642400-37648800	Weak transcription	Fetal Kidney	kidney
21	chr2:37642600-37643800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr2:37642600-37644200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr2:37642600-37644200	Weak transcription	HSMM	muscle
24	chr2:37642600-37644400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr2:37642600-37648800	Weak transcription	Fetal Stomach	stomach
26	chr2:37642800-37643200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr2:37642800-37643600	Enhancers	K562	blood
28	chr2:37642800-37644200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr2:37642800-37644200	Weak transcription	Osteobl	bone
30	chr2:37643000-37643200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr2:37643000-37648800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links