Variant report

Variant	rs538461831
Chromosome Location	chr3:145437181-145437182
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877584	chr3:144903957-145833232	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv3330499	chr3:145334189-145596853	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3379945	chr3:145351163-145679850	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv523075	chr3:145387917-145482086	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv523565	chr3:145433939-145482086	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv877609	chr3:145433939-145504317	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3327389	chr3:145437087-145439635	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145430000-145437400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:145436600-145437800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:145436600-145437800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:145436800-145437400	Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr3:145436800-145437400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:145436800-145437400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:145436800-145437600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr3:145436800-145437800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr3:145436800-145437800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr3:145436800-145437800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr3:145436800-145437800	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr3:145437000-145437400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr3:145437000-145437400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:145437000-145437600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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