Variant report

Variant	rs538498189
Chromosome Location	chr1:160793883-160793884
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1822379	chr1:160545332-160831143	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv464161	chr1:160747615-160852046	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv548057	chr1:160747615-160852046	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv825087	chr1:160793152-160793980	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
5	nsv825098	chr1:160793398-160793980	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
6	nsv825109	chr1:160793398-160794018	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
7	nsv825120	chr1:160793398-160794045	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
8	nsv825131	chr1:160793398-160794075	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
9	nsv825143	chr1:160793409-160794018	Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160771000-160806600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr1:160778000-160795600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr1:160778000-160798400	Strong transcription	Primary B cells from peripheral blood	blood
4	chr1:160778400-160799600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr1:160782400-160798200	Strong transcription	Primary T helper cells PMA-I stimulated	--
6	chr1:160782600-160803200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr1:160783800-160798200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr1:160783800-160801000	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr1:160783800-160803200	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr1:160790000-160794200	Strong transcription	Primary B cells from cord blood	blood
11	chr1:160790600-160803000	Strong transcription	Primary T cells from cord blood	blood
12	chr1:160791000-160794400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr1:160791200-160795000	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr1:160791200-160798200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr1:160791200-160800000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr1:160792000-160794000	Strong transcription	Thymus	Thymus
17	chr1:160792400-160794400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
18	chr1:160792400-160794400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr1:160792400-160798600	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr1:160792600-160794400	Strong transcription	Primary T killer memory cells from peripheral blood	blood
21	chr1:160792800-160794000	Strong transcription	Spleen	Spleen
22	chr1:160792800-160794200	Strong transcription	Fetal Thymus	thymus
23	chr1:160793000-160811600	Weak transcription	Gastric	stomach
24	chr1:160793200-160794400	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr1:160793400-160807400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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