Variant report

Variant	rs538504523
Chromosome Location	chr4:101960765-101960766
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:35 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv3465844	chr4:101958129-101962627	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv3417198	chr4:101959379-101962177	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv3465845	chr4:101959638-101961459	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv513153	chr4:101959694-101961228	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3486460	chr4:101959771-101961606	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv820786	chr4:101959986-101961205	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv822672	chr4:101959986-101961413	Strong transcription Genic enhancers Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv3465840	chr4:101960019-101961304	Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
10	esv3486458	chr4:101960052-101961303	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv3486465	chr4:101960053-101961289	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
12	nsv822673	chr4:101960065-101961146	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
13	esv3465838	chr4:101960068-101961267	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
14	esv3486462	chr4:101960070-101961256	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
15	esv3465837	chr4:101960075-101961271	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
16	esv3465839	chr4:101960090-101961212	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
17	nsv820075	chr4:101960094-101961091	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
18	esv3486461	chr4:101960095-101961237	Weak transcription Genic enhancers Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
19	nsv511238	chr4:101960095-101965295	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
20	esv3486459	chr4:101960102-101961249	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
21	esv3342813	chr4:101960115-101961207	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
22	esv20737	chr4:101960122-101961205	Strong transcription Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
23	esv3465843	chr4:101960137-101961197	Weak transcription Genic enhancers Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
24	esv3486464	chr4:101960150-101961193	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
25	esv3465846	chr4:101960154-101961191	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
26	esv3486466	chr4:101960154-101961191	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
27	esv13497	chr4:101960217-101960859	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	inside rSNPs	n/a
28	nsv594947	chr4:101960259-101960809	Strong transcription Weak transcription Enhancers Genic enhancers	n/a	n/a	inside rSNPs	n/a
29	nsv594948	chr4:101960259-101960840	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	inside rSNPs	n/a
30	nsv594949	chr4:101960259-101961947	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
31	esv1837646	chr4:101960259-101965295	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
32	nsv594950	chr4:101960312-101960809	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	inside rSNPs	n/a
33	nsv594951	chr4:101960312-101960840	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	n/a
34	nsv594952	chr4:101960312-101961947	Weak transcription Genic enhancers Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
35	nsv594953	chr4:101960364-101960840	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101936200-101967800	Weak transcription	Fetal Kidney	kidney
2	chr4:101941200-101971000	Weak transcription	Psoas Muscle	Psoas
3	chr4:101941200-102000200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr4:101941200-102035600	Weak transcription	Fetal Intestine Small	intestine
5	chr4:101942000-101970200	Weak transcription	Brain Hippocampus Middle	brain
6	chr4:101942400-101971400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:101942600-101966800	Weak transcription	Gastric	stomach
8	chr4:101942600-102003200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr4:101942600-102024400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr4:101943000-101961800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:101943200-101967400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr4:101943200-101967400	Weak transcription	Spleen	Spleen
13	chr4:101943400-101964200	Weak transcription	Colon Smooth Muscle	Colon
14	chr4:101943400-101967200	Weak transcription	Fetal Brain Male	brain
15	chr4:101943800-101960800	Weak transcription	Esophagus	oesophagus
16	chr4:101943800-102023400	Weak transcription	Fetal Lung	lung
17	chr4:101944000-101962000	Weak transcription	A549	lung
18	chr4:101944000-101964600	Weak transcription	NHLF	lung
19	chr4:101944400-101968400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr4:101944400-101981200	Weak transcription	Pancreas	Pancrea
21	chr4:101944400-102000200	Weak transcription	Fetal Stomach	stomach
22	chr4:101945400-101961000	Weak transcription	Fetal Brain Female	brain
23	chr4:101945400-101961600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr4:101945600-101970800	Weak transcription	Brain Cingulate Gyrus	brain
25	chr4:101945800-101970800	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr4:101947800-102012600	Weak transcription	Fetal Muscle Leg	muscle
27	chr4:101950200-101967000	Weak transcription	Stomach Mucosa	stomach
28	chr4:101950200-101971400	Weak transcription	Brain Angular Gyrus	brain
29	chr4:101950400-101964000	Weak transcription	HSMMtube	muscle
30	chr4:101950400-101965800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr4:101950400-101971400	Weak transcription	Brain Anterior Caudate	brain
32	chr4:101951800-101967200	Weak transcription	Right Ventricle	heart
33	chr4:101953600-101966000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr4:101953600-101970200	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr4:101953600-101972000	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr4:101953600-101983800	Weak transcription	Duodenum Mucosa	Duodenum
37	chr4:101953600-101992200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr4:101953600-102015200	Weak transcription	Fetal Intestine Large	intestine
39	chr4:101954000-101965800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr4:101954200-101972000	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr4:101955400-101966000	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr4:101955400-101966000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr4:101955600-101961800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr4:101955800-101961800	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr4:101956600-101963000	Strong transcription	Primary B cells from peripheral blood	blood
46	chr4:101957200-101961600	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr4:101957200-101966400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr4:101958000-101961600	Strong transcription	Liver	Liver
49	chr4:101958000-101962200	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr4:101958200-101961600	Strong transcription	Rectal Mucosa Donor 29	rectum

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