Variant report

Variant	rs538810763
Chromosome Location	chr1:211590405-211590406
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762141	chr1:211538685-211603843	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	n/a
2	esv1824154	chr1:211565640-211614280	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a
3	esv3362349	chr1:211588754-211591702	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	esv3433824	chr1:211589079-211591127	Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211581400-211608200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr1:211581800-211590600	Weak transcription	Fetal Intestine Small	intestine
3	chr1:211585400-211593200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:211589200-211590600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:211589200-211590800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:211589400-211590600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:211589400-211590600	Active TSS	Primary hematopoietic stem cells short term culture	blood
8	chr1:211589400-211590600	Active TSS	Primary T helper cells PMA-I stimulated	--
9	chr1:211589400-211590600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:211589400-211590600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr1:211589400-211590600	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr1:211589400-211590600	Active TSS	Rectal Mucosa Donor 29	rectum
13	chr1:211589400-211590600	Active TSS	A549	lung
14	chr1:211589400-211590600	Active TSS	NHDF-Ad	bronchial
15	chr1:211589400-211591000	Active TSS	Brain Hippocampus Middle	brain
16	chr1:211589600-211590600	Active TSS	Breast Myoepithelial Primary Cells	Breast
17	chr1:211589600-211590600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
18	chr1:211589600-211590600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr1:211589600-211590600	Active TSS	Right Atrium	heart
20	chr1:211589600-211590600	Active TSS	NHLF	lung
21	chr1:211589600-211608800	Weak transcription	GM12878-XiMat	blood
22	chr1:211589800-211590600	Bivalent/Poised TSS	Monocytes-CD14+_RO01746	blood
23	chr1:211590000-211590600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr1:211590200-211590600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr1:211590200-211590600	Enhancers	Liver	Liver
26	chr1:211590200-211590600	Enhancers	Brain Angular Gyrus	brain
27	chr1:211590200-211590600	Active TSS	Duodenum Smooth Muscle	Duodenum
28	chr1:211590200-211590600	Flanking Active TSS	HSMMtube	muscle
29	chr1:211590200-211590800	Weak transcription	Fetal Intestine Large	intestine
30	chr1:211590200-211591000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr1:211590200-211593600	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr1:211590200-211601000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr1:211590400-211590600	Flanking Active TSS	H1 Cell Line	embryonic stem cell
34	chr1:211590400-211590600	Flanking Active TSS	H9 Cell Line	embryonic stem cell
35	chr1:211590400-211590600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
36	chr1:211590400-211590600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
37	chr1:211590400-211590600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
38	chr1:211590400-211590600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr1:211590400-211590600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
40	chr1:211590400-211590600	Flanking Active TSS	Adipose Nuclei	Adipose
41	chr1:211590400-211590600	Flanking Active TSS	Brain Substantia Nigra	brain
42	chr1:211590400-211590600	Enhancers	Fetal Thymus	thymus
43	chr1:211590400-211590600	Enhancers	Pancreas	Pancrea
44	chr1:211590400-211590600	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr1:211590400-211590600	Flanking Active TSS	NH-A	brain
46	chr1:211590400-211590600	Flanking Active TSS	Osteobl	bone
47	chr1:211590400-211590800	Enhancers	Primary T cells fromperipheralblood	blood
48	chr1:211590400-211590800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr1:211590400-211590800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
50	chr1:211590400-211590800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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