Variant report

Variant	rs538890052
Chromosome Location	chr15:34501116-34501117
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:34499795..34503886-chr15:34627014..34631557,6	K562	blood:
2	chr15:34495437..34497822-chr15:34498910..34501986,3	K562	blood:
3	chr15:34500839..34504564-chr15:34529168..34532268,3	K562	blood:
4	chr15:34500871..34503422-chr15:34659158..34662481,4	K562	blood:
5	chr15:34499979..34501661-chr15:34634378..34636631,2	K562	blood:
6	chr15:34499795..34502298-chr15:34629083..34632074,3	K562	blood:
7	chr15:34498121..34503791-chr15:34514506..34519551,14	K562	blood:
8	chr15:34391225..34395745-chr15:34498845..34504196,8	K562	blood:
9	chr15:34329770..34332450-chr15:34500868..34502911,3	K562	blood:
10	chr15:34474173..34475997-chr15:34500138..34502124,2	MCF-7	breast:
11	chr15:34497680..34504001-chr15:34514973..34521212,14	K562	blood:
12	chr15:34417003..34419819-chr15:34499362..34502166,2	K562	blood:
13	chr15:34500616..34503501-chr15:34610779..34612770,2	K562	blood:
14	chr15:34491377..34494902-chr15:34500682..34503965,3	K562	blood:
15	chr15:34391885..34395742-chr15:34500701..34502399,4	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C15orf29-1	chr15:34500718-34502270	NONHSAT041571

No data

Variant related genes	Relation type
ENSG00000134152	Chromatin interaction
ENSG00000128463	Chromatin interaction
ENSG00000184507	Chromatin interaction
ENSG00000176454	Chromatin interaction
ENSG00000169857	Chromatin interaction
ENSG00000182405	Chromatin interaction
ENSG00000134153	Chromatin interaction
ENSG00000140199	Chromatin interaction
ENSG00000182117	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052804	chr15:34498529-34841447	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv542341	chr15:34498529-34841447	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv1045173	chr15:34501055-34596995	Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34454600-34501200	Weak transcription	Colonic Mucosa	Colon
2	chr15:34477600-34501200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:34479400-34501600	Weak transcription	Lung	lung
4	chr15:34479600-34501800	Weak transcription	Spleen	Spleen
5	chr15:34486400-34501600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:34492200-34501600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr15:34499800-34501200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr15:34499800-34502600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr15:34500200-34501200	Enhancers	Primary T cells from cord blood	blood
10	chr15:34500200-34501600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:34500200-34501600	Weak transcription	Pancreas	Pancrea
12	chr15:34500200-34502600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:34500400-34501200	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr15:34500400-34501200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
15	chr15:34500400-34501200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr15:34500400-34501200	Enhancers	Thymus	Thymus
17	chr15:34500400-34501200	Flanking Active TSS	HUVEC	blood vessel
18	chr15:34500400-34501400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
19	chr15:34500400-34501400	Flanking Active TSS	Duodenum Mucosa	Duodenum
20	chr15:34500400-34501400	Flanking Active TSS	Dnd41	blood
21	chr15:34500400-34501400	Flanking Active TSS	Hela-S3	cervix
22	chr15:34500400-34501600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr15:34500400-34502400	Active TSS	H1 Cell Line	embryonic stem cell
24	chr15:34500400-34502400	Active TSS	HUES48 Cell Line	embryonic stem cell
25	chr15:34500400-34502600	Active TSS	HSMM	muscle
26	chr15:34500400-34502600	Active TSS	HSMMtube	muscle
27	chr15:34500600-34501200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
28	chr15:34500600-34501200	Flanking Active TSS	A549	lung
29	chr15:34500600-34501400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr15:34500600-34501400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr15:34500600-34501600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr15:34500600-34501600	Weak transcription	Esophagus	oesophagus
33	chr15:34500600-34502200	Active TSS	ES-I3 Cell Line	embryonic stem cell
34	chr15:34500600-34502200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr15:34500600-34502400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr15:34500600-34502400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr15:34500600-34502400	Active TSS	Fetal Muscle Leg	muscle
38	chr15:34500600-34502400	Active TSS	HMEC	breast
39	chr15:34500600-34502400	Active TSS	NHDF-Ad	bronchial
40	chr15:34500600-34502600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr15:34500600-34502600	Active TSS	Placenta	Placenta
42	chr15:34500600-34502600	Active TSS	GM12878-XiMat	blood
43	chr15:34500600-34502800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr15:34500800-34501200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
45	chr15:34500800-34501200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
46	chr15:34500800-34501200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr15:34500800-34501200	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
48	chr15:34500800-34501200	Enhancers	Primary T helper cells fromperipheralblood	blood
49	chr15:34500800-34501200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
50	chr15:34500800-34501200	Flanking Active TSS	Fetal Brain Female	brain

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