Variant report

Variant	rs538906544
Chromosome Location	chr5:98358940-98358941
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:98356545..98359049-chr5:98366364..98368367,2	K562	blood:
2	chr5:98354255..98355887-chr5:98357343..98359494,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024391	chr5:98355665-98653657	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv599118	chr5:98358191-99029453	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv599119	chr5:98358191-99315677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98353600-98361600	Weak transcription	Small Intestine	intestine
2	chr5:98356000-98360600	Weak transcription	Colonic Mucosa	Colon
3	chr5:98356400-98360400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr5:98356400-98360400	Weak transcription	GM12878-XiMat	blood
5	chr5:98356400-98361000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr5:98356400-98361000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr5:98356400-98361000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:98356400-98361200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr5:98356400-98361200	Weak transcription	Fetal Stomach	stomach
10	chr5:98356400-98361600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr5:98356400-98361800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr5:98356400-98362400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr5:98356800-98361000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr5:98356800-98361000	Weak transcription	A549	lung
15	chr5:98356800-98361000	Weak transcription	HUVEC	blood vessel
16	chr5:98356800-98361200	Weak transcription	Adipose Nuclei	Adipose
17	chr5:98357000-98360200	Weak transcription	Liver	Liver
18	chr5:98357000-98360400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr5:98357000-98361200	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr5:98357000-98362000	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr5:98357200-98360200	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr5:98357400-98360200	Weak transcription	Duodenum Mucosa	Duodenum
23	chr5:98357400-98368400	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr5:98358200-98360000	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr5:98358200-98366800	Weak transcription	K562	blood
26	chr5:98358400-98360000	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr5:98358400-98360000	Weak transcription	HepG2	liver
28	chr5:98358400-98360200	Weak transcription	Fetal Intestine Small	intestine
29	chr5:98358600-98360000	Weak transcription	Fetal Intestine Large	intestine
30	chr5:98358800-98360000	Weak transcription	Stomach Mucosa	stomach

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