Variant report

Variant	rs538916349
Chromosome Location	chr9:14323-14324
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DOCK8-7	chr9:13516-14522	NONHSAT129877

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv982187	chr9:10001-32355	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv8400	chr9:10001-51412	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv891939	chr9:10001-129899	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
4	esv16986	chr9:10485-25682	Genic enhancers Bivalent/Poised TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv19929	chr9:10485-48531	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv949672	chr9:13091-274606	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
7	nsv948701	chr9:13091-499586	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
8	nsv949346	chr9:13091-776349	Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
9	nsv982355	chr9:13840-19662	Weak transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:10400-21600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:11000-14600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr9:11000-16000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:11200-21600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr9:11400-14400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr9:11400-20800	Weak transcription	Thymus	Thymus
7	chr9:11800-21600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:12000-21600	Weak transcription	Spleen	Spleen
9	chr9:12800-21600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr9:12800-28800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr9:13000-21800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr9:14200-14400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr9:14200-14400	Enhancers	Brain Hippocampus Middle	brain
14	chr9:14200-14400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr9:14200-14400	Enhancers	Fetal Intestine Large	intestine
16	chr9:14200-14400	Enhancers	A549	lung
17	chr9:14200-14600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr9:14200-14600	Enhancers	Fetal Heart	heart
19	chr9:14200-14600	Enhancers	Stomach Mucosa	stomach
20	chr9:14200-14600	Enhancers	K562	blood
21	chr9:14200-14800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr9:14200-14800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr9:14200-14800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr9:14200-14800	Enhancers	Duodenum Mucosa	Duodenum
25	chr9:14200-14800	Enhancers	Esophagus	oesophagus
26	chr9:14200-14800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr9:14200-14800	Enhancers	Fetal Lung	lung
28	chr9:14200-14800	Enhancers	Fetal Stomach	stomach
29	chr9:14200-14800	Enhancers	Gastric	stomach
30	chr9:14200-14800	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr9:14200-14800	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr9:14200-14800	Enhancers	HSMM	muscle
33	chr9:14200-14800	Enhancers	HSMMtube	muscle
34	chr9:14200-15000	Enhancers	Fetal Muscle Trunk	muscle
35	chr9:14200-15000	Enhancers	Lung	lung

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