Variant report

Variant	rs538939451
Chromosome Location	chr18:30351918-30351919
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448189	chr18:30350054-30353852	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3362586	chr18:30350779-30353327	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3342953	chr18:30350854-30353352	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30348800-30353600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
2	chr18:30349200-30352600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr18:30349200-30353600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr18:30349400-30352400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
5	chr18:30349400-30352600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
6	chr18:30349400-30352600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
7	chr18:30349400-30352600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
8	chr18:30349600-30352000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
9	chr18:30349600-30352200	Bivalent/Poised TSS	Small Intestine	intestine
10	chr18:30349600-30352400	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr18:30349600-30352400	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
12	chr18:30349600-30352600	Bivalent/Poised TSS	Psoas Muscle	Psoas
13	chr18:30349800-30352000	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
14	chr18:30349800-30352400	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
15	chr18:30350200-30352400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr18:30350200-30352400	Active TSS	HepG2	liver
17	chr18:30350200-30352600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
18	chr18:30350200-30352800	Active TSS	Fetal Kidney	kidney
19	chr18:30350600-30352600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
20	chr18:30350600-30352600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
21	chr18:30350800-30352000	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
22	chr18:30350800-30352000	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
23	chr18:30350800-30352000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
24	chr18:30350800-30352000	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
25	chr18:30350800-30352400	Active TSS	Aorta	Aorta
26	chr18:30351000-30352000	Bivalent/Poised TSS	Primary T helper naive cells fromperipheralblood	blood
27	chr18:30351000-30352400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
28	chr18:30351000-30352400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr18:30351000-30352400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr18:30351000-30352400	Enhancers	Lung	lung
31	chr18:30351000-30352600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr18:30351200-30352000	Active TSS	Primary B cells from cord blood	blood
33	chr18:30351200-30352200	Active TSS	Primary B cells from peripheral blood	blood
34	chr18:30351200-30352200	Bivalent/Poised TSS	Colonic Mucosa	Colon
35	chr18:30351200-30352200	Active TSS	Ovary	ovary
36	chr18:30351200-30352200	Bivalent/Poised TSS	NH-A	brain
37	chr18:30351200-30352400	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr18:30351200-30352400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr18:30351200-30352400	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
40	chr18:30351200-30352400	Bivalent/Poised TSS	Esophagus	oesophagus
41	chr18:30351200-30352400	Active TSS	Gastric	stomach
42	chr18:30351200-30352400	Bivalent/Poised TSS	Left Ventricle	heart
43	chr18:30351200-30352600	Active TSS	H9 Cell Line	embryonic stem cell
44	chr18:30351200-30352600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr18:30351200-30352600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr18:30351200-30352800	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
47	chr18:30351400-30352000	Active TSS	Right Ventricle	heart
48	chr18:30351400-30352200	Bivalent/Poised TSS	Adipose Nuclei	Adipose
49	chr18:30351400-30352200	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
50	chr18:30351400-30352200	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum

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