Variant report

Variant	rs539095362
Chromosome Location	chr4:120205627-120205628
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv1012868	chr4:120014630-120464880	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv537232	chr4:120014630-120464880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
5	nsv428769	chr4:120205572-120363323	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120136200-120219200	Weak transcription	Brain Angular Gyrus	brain
2	chr4:120148200-120213600	Weak transcription	Fetal Muscle Leg	muscle
3	chr4:120159400-120206200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr4:120166400-120206200	Weak transcription	Small Intestine	intestine
5	chr4:120170600-120206200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr4:120174400-120206200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr4:120177000-120206000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr4:120177000-120213600	Weak transcription	Lung	lung
9	chr4:120177000-120220200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr4:120177000-120220200	Weak transcription	Pancreas	Pancrea
11	chr4:120177200-120206200	Weak transcription	Colon Smooth Muscle	Colon
12	chr4:120177200-120213600	Weak transcription	Esophagus	oesophagus
13	chr4:120177800-120211400	Weak transcription	HepG2	liver
14	chr4:120178200-120213400	Weak transcription	Primary B cells from peripheral blood	blood
15	chr4:120178200-120213600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr4:120178200-120213800	Weak transcription	Primary B cells from cord blood	blood
17	chr4:120178600-120206200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr4:120178600-120217600	Weak transcription	Fetal Stomach	stomach
19	chr4:120187000-120219200	Weak transcription	Right Ventricle	heart
20	chr4:120187800-120206000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr4:120189800-120206200	Weak transcription	Brain Substantia Nigra	brain
22	chr4:120190000-120206000	Weak transcription	Fetal Kidney	kidney
23	chr4:120190400-120206000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr4:120193000-120206000	Weak transcription	HSMMtube	muscle
25	chr4:120193000-120206200	Weak transcription	Colonic Mucosa	Colon
26	chr4:120193000-120217600	Weak transcription	Psoas Muscle	Psoas
27	chr4:120193000-120219200	Weak transcription	Fetal Brain Male	brain
28	chr4:120193200-120206000	Weak transcription	Adipose Nuclei	Adipose
29	chr4:120193200-120206000	Weak transcription	Brain Anterior Caudate	brain
30	chr4:120193200-120206000	Weak transcription	Fetal Lung	lung
31	chr4:120193200-120206000	Weak transcription	Stomach Smooth Muscle	stomach
32	chr4:120193200-120212600	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr4:120193400-120206000	Weak transcription	HMEC	breast
34	chr4:120193400-120206000	Weak transcription	NH-A	brain
35	chr4:120193800-120206000	Weak transcription	Ovary	ovary
36	chr4:120193800-120213600	Weak transcription	Left Ventricle	heart
37	chr4:120194400-120206000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr4:120194600-120206000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr4:120194600-120213400	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr4:120194800-120206000	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr4:120195000-120205800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr4:120195000-120206000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr4:120195000-120206000	Weak transcription	Duodenum Mucosa	Duodenum
44	chr4:120195000-120206000	Weak transcription	Fetal Intestine Large	intestine
45	chr4:120195000-120211800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr4:120195200-120206000	Weak transcription	Osteobl	bone
47	chr4:120195200-120208200	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr4:120199000-120206000	Weak transcription	Fetal Heart	heart
49	chr4:120201200-120212400	Weak transcription	Placenta	Placenta
50	chr4:120201200-120220200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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