Variant report

Variant	rs539166983
Chromosome Location	chr6:80629058-80629059
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1032347	chr6:80284809-80694778	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv3475140	chr6:80592690-80679283	Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv3475142	chr6:80592789-80679132	Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	esv3380489	chr6:80628815-80629720	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
6	esv3335420	chr6:80628827-80629715	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80618400-80656000	Weak transcription	Aorta	Aorta
2	chr6:80619200-80631800	Weak transcription	Esophagus	oesophagus
3	chr6:80621000-80630000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:80621200-80630400	Weak transcription	Ovary	ovary
5	chr6:80621800-80630000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:80621800-80632000	Weak transcription	Brain Angular Gyrus	brain
7	chr6:80621800-80635000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:80622000-80643800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:80622000-80644200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:80622600-80630000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:80622600-80632400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr6:80622600-80636800	Strong transcription	Dnd41	blood
13	chr6:80622600-80639600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr6:80622800-80630000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:80623200-80632400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:80623400-80630400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr6:80623400-80639000	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr6:80624000-80630400	Weak transcription	Primary T cells from cord blood	blood
19	chr6:80624000-80643000	Weak transcription	NHDF-Ad	bronchial
20	chr6:80624400-80631600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr6:80624400-80637800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr6:80624800-80636000	Weak transcription	Fetal Stomach	stomach
23	chr6:80625000-80630000	Weak transcription	Brain Germinal Matrix	brain
24	chr6:80625000-80633000	Weak transcription	Stomach Smooth Muscle	stomach
25	chr6:80625000-80633400	Weak transcription	HSMM	muscle
26	chr6:80625600-80636600	Strong transcription	Fetal Thymus	thymus
27	chr6:80626200-80633800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:80626600-80633000	Weak transcription	Fetal Brain Female	brain
29	chr6:80626800-80630200	Weak transcription	Fetal Brain Male	brain
30	chr6:80628400-80629200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr6:80628600-80629800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:80628600-80629800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr6:80628600-80630000	Weak transcription	Thymus	Thymus
34	chr6:80628600-80631000	Weak transcription	HMEC	breast
35	chr6:80628600-80638600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr6:80628800-80631400	Weak transcription	Fetal Intestine Large	intestine

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