Variant report

Variant	rs539235344
Chromosome Location	chr14:70002390-70002391
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70001853..70002635-chr14:70034399..70035068,2	MCF-7	breast:
2	chr14:70002103..70002603-chr14:70041525..70042102,2	K562	blood:
3	chr14:70001801..70002678-chr14:70039788..70040731,3	MCF-7	breast:
4	chr14:69970253..69971296-chr14:70001641..70002581,3	MCF-7	breast:
5	chr14:70001699..70002644-chr14:70040741..70042019,6	MCF-7	breast:
6	chr14:70000714..70002427-chr14:70038896..70041033,2	MCF-7	breast:
7	chr14:70001682..70002652-chr14:70041139..70042080,9	MCF-7	breast:
8	chr14:70001892..70002546-chr14:70046761..70047295,2	MCF-7	breast:
9	chr14:70001746..70002559-chr14:70051373..70051892,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv510642	chr14:69983293-70030335	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv564968	chr14:70000399-70021562	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv564969	chr14:70000399-70022351	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv564970	chr14:70000399-70040161	Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv94	chr14:70002365-70030415	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1334	chr14:70002365-70032641	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70000400-70003200	Weak transcription	Esophagus	oesophagus
2	chr14:70001800-70002400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr14:70001800-70002600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr14:70002000-70002400	Enhancers	Stomach Mucosa	stomach
5	chr14:70002200-70002400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr14:70002200-70002400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr14:70002200-70002400	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
8	chr14:70002200-70002400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:70002200-70002400	Enhancers	Brain Anterior Caudate	brain
10	chr14:70002200-70002400	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr14:70002200-70002400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
12	chr14:70002200-70002400	Bivalent Enhancer	HUVEC	blood vessel
13	chr14:70002200-70002400	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr14:70002200-70002400	Bivalent Enhancer	Osteobl	bone
15	chr14:70002200-70002600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr14:70002200-70002600	Enhancers	Hela-S3	cervix

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links