Variant report

Variant rs539288
Chromosome Location chr1:92650349-92650350
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:92609800-92651200 Weak transcription Fetal Kidney kidney
2 chr1:92625600-92651000 Weak transcription Stomach Smooth Muscle stomach
3 chr1:92626200-92652000 Weak transcription Skeletal Muscle Female skeletal muscle
4 chr1:92626600-92650800 Weak transcription Duodenum Mucosa Duodenum
5 chr1:92626600-92657400 Weak transcription Right Ventricle heart
6 chr1:92626800-92651400 Weak transcription Primary T helper cells fromperipheralblood blood
7 chr1:92628200-92651800 Weak transcription Sigmoid Colon Sigmoid Colon
8 chr1:92635200-92650400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
9 chr1:92636200-92651000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
10 chr1:92636800-92652400 Weak transcription Fetal Brain Female brain
11 chr1:92642400-92662600 Weak transcription NHDF-Ad bronchial
12 chr1:92645600-92650400 Weak transcription Thymus Thymus
13 chr1:92646400-92652000 Weak transcription Psoas Muscle Psoas
14 chr1:92646600-92651400 Weak transcription Skeletal Muscle Male skeletal muscle
15 chr1:92646600-92652200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
16 chr1:92646800-92651000 Weak transcription Rectal Mucosa Donor 31 rectum
17 chr1:92646800-92652000 Weak transcription Fetal Intestine Large intestine
18 chr1:92647000-92651400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
19 chr1:92647200-92652000 Weak transcription Duodenum Smooth Muscle Duodenum
20 chr1:92647200-92653600 Weak transcription Brain Cingulate Gyrus brain
21 chr1:92647200-92655800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
22 chr1:92647400-92651400 Weak transcription Liver Liver
23 chr1:92647400-92651400 Weak transcription Brain Angular Gyrus brain
24 chr1:92647400-92652000 Weak transcription Fetal Adrenal Gland Adrenal Gland
25 chr1:92647400-92652600 Weak transcription Primary hematopoietic stem cells blood
26 chr1:92647600-92651000 Weak transcription Fetal Brain Male brain
27 chr1:92647600-92652400 Weak transcription Brain Hippocampus Middle brain
28 chr1:92648000-92651400 Weak transcription Fetal Lung lung
29 chr1:92648000-92652000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
30 chr1:92648000-92654000 Weak transcription Primary T cells from cord blood blood
31 chr1:92648200-92651600 Weak transcription Brain Inferior Temporal Lobe brain
32 chr1:92649400-92650800 Strong transcription Brain Anterior Caudate brain
33 chr1:92649400-92651000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr1:92649600-92651000 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
35 chr1:92649600-92651200 Enhancers NH-A brain
36 chr1:92649600-92651400 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
37 chr1:92649600-92651800 Enhancers HMEC breast
38 chr1:92649600-92652000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
39 chr1:92649600-92652200 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
40 chr1:92649600-92652200 Enhancers HSMM muscle
41 chr1:92649600-92652200 Enhancers Osteobl bone
42 chr1:92649800-92650800 Enhancers ES-I3 Cell Line embryonic stem cell
43 chr1:92649800-92650800 Enhancers Hela-S3 cervix
44 chr1:92649800-92651400 Weak transcription Breast Myoepithelial Primary Cells Breast
45 chr1:92649800-92651400 Weak transcription Left Ventricle heart
46 chr1:92649800-92652000 Weak transcription Adipose Nuclei Adipose
47 chr1:92649800-92652000 Weak transcription Brain Substantia Nigra brain
48 chr1:92650000-92651200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
49 chr1:92650000-92652000 Enhancers HSMMtube muscle
50 chr1:92650200-92650600 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived

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