Variant report

Variant	rs539483125
Chromosome Location	chr3:142606523-142606524
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:142591058..142593405-chr3:142604358..142606915,2	K562	blood:
2	chr3:142547623..142548524-chr3:142606430..142607428,2	MCF-7	breast:
3	chr3:142605846..142608751-chr3:142718093..142722238,5	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PAQR9-3	chr3:142606511-142606619	NONHSAT092487
2	lnc-PAQR9-3	chr3:142606068-142606619	NONHSAT092489
3	lnc-PAQR9-3	chr3:142606511-142606619	NONHSAT092488

No data

Variant related genes	Relation type
ENSG00000163714	Chromatin interaction
ENSG00000268129	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877562	chr3:142573789-142846370	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv437342	chr3:142605233-142622834	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142586000-142606600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:142603400-142607000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:142603600-142607000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:142604000-142606600	Weak transcription	Liver	Liver
5	chr3:142604400-142606600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:142604800-142606600	Weak transcription	Right Ventricle	heart
7	chr3:142605000-142607000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr3:142605200-142606800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr3:142605200-142607000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:142605400-142606800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:142605400-142606800	Enhancers	Osteobl	bone
12	chr3:142605400-142607200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:142605600-142607000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr3:142605600-142607000	Enhancers	NHEK	skin
15	chr3:142605800-142606800	Enhancers	Brain Germinal Matrix	brain
16	chr3:142605800-142606800	Weak transcription	K562	blood
17	chr3:142605800-142606800	Enhancers	NHDF-Ad	bronchial
18	chr3:142605800-142607000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr3:142606000-142606600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:142606000-142607000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr3:142606000-142607000	Enhancers	HSMM	muscle
22	chr3:142606000-142607800	Active TSS	Right Atrium	heart
23	chr3:142606200-142606800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr3:142606200-142607000	Enhancers	NH-A	brain
25	chr3:142606200-142607200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr3:142606200-142607400	Flanking Active TSS	Adipose Nuclei	Adipose
27	chr3:142606400-142606600	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr3:142606400-142606800	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr3:142606400-142606800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr3:142606400-142606800	Flanking Active TSS	A549	lung
31	chr3:142606400-142606800	Weak transcription	HMEC	breast
32	chr3:142606400-142607000	Flanking Active TSS	Hela-S3	cervix
33	chr3:142606400-142608200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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