Variant report

Variant	rs539484339
Chromosome Location	chr14:56084640-56084641
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:56046049..56048917-chr14:56082832..56086431,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000186615	Chromatin interaction
ENSG00000126777	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901960	chr14:55853724-56085130	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv901961	chr14:55853724-56101879	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv901962	chr14:55862956-56101879	Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	nsv901963	chr14:55871452-56085130	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv901964	chr14:55871452-56101879	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
6	nsv1051564	chr14:55895610-56130788	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
7	nsv542103	chr14:55895610-56130788	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv901965	chr14:55976428-56101879	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
9	nsv832804	chr14:56083850-56277632	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56048400-56086000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:56061000-56085400	Weak transcription	Fetal Kidney	kidney
3	chr14:56061000-56085400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr14:56066600-56086200	Weak transcription	Fetal Intestine Small	intestine
5	chr14:56066600-56086200	Weak transcription	Gastric	stomach
6	chr14:56066800-56086200	Weak transcription	Fetal Stomach	stomach
7	chr14:56068600-56086200	Weak transcription	Spleen	Spleen
8	chr14:56068600-56086600	Weak transcription	Lung	lung
9	chr14:56069600-56086800	Weak transcription	Pancreas	Pancrea
10	chr14:56070400-56086200	Weak transcription	Aorta	Aorta
11	chr14:56070800-56085000	Weak transcription	Colon Smooth Muscle	Colon
12	chr14:56071000-56086000	Weak transcription	Thymus	Thymus
13	chr14:56071800-56086200	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr14:56072400-56086200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr14:56074600-56086000	Weak transcription	Brain Angular Gyrus	brain
16	chr14:56076200-56086000	Weak transcription	Small Intestine	intestine
17	chr14:56076400-56085800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr14:56076600-56085800	Weak transcription	Ovary	ovary
19	chr14:56076600-56086000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr14:56076600-56086200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr14:56077000-56085000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr14:56077000-56085000	Weak transcription	Right Ventricle	heart
23	chr14:56077000-56085600	Weak transcription	Brain Substantia Nigra	brain
24	chr14:56077000-56085800	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr14:56077000-56086000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr14:56077000-56086200	Weak transcription	NHLF	lung
27	chr14:56077800-56087800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr14:56077800-56092000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr14:56078200-56086000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr14:56078600-56085400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr14:56078600-56148600	Weak transcription	Stomach Mucosa	stomach
32	chr14:56078800-56095400	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr14:56079000-56085800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr14:56079000-56085800	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr14:56079000-56086000	Strong transcription	Primary B cells from cord blood	blood
36	chr14:56079000-56086000	Strong transcription	Primary B cells from peripheral blood	blood
37	chr14:56079000-56086800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr14:56079000-56086800	Strong transcription	Fetal Intestine Large	intestine
39	chr14:56079000-56089000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr14:56079000-56091000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr14:56079200-56085200	Strong transcription	Dnd41	blood
42	chr14:56079200-56095200	Strong transcription	Primary T cells from cord blood	blood
43	chr14:56079400-56085600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr14:56079800-56085800	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr14:56079800-56088400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr14:56079800-56111400	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr14:56080200-56086600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr14:56080200-56097800	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr14:56080400-56085200	Strong transcription	A549	lung
50	chr14:56080400-56086400	Strong transcription	Fetal Muscle Trunk	muscle

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