Variant report

Variant	rs539510277
Chromosome Location	chr7:138164232-138164233
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:138163657..138165356-chr7:138165416..138167827,2	K562	blood:
2	chr7:138156609..138159156-chr7:138163880..138167258,3	K562	blood:

Variant related genes	Relation type
ENSG00000239123	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831153	chr7:138078179-138265648	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv981589	chr7:138163846-138177455	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138147000-138165000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:138147200-138168400	Weak transcription	Fetal Muscle Leg	muscle
3	chr7:138147200-138183800	Weak transcription	Primary B cells from cord blood	blood
4	chr7:138147200-138189000	Weak transcription	Thymus	Thymus
5	chr7:138149800-138188600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:138153800-138166200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr7:138153800-138184200	Weak transcription	Fetal Stomach	stomach
8	chr7:138154800-138167200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:138155200-138184200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr7:138156000-138165200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr7:138157000-138165200	Enhancers	Liver	Liver
12	chr7:138157600-138191400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr7:138157800-138166800	Weak transcription	Right Atrium	heart
14	chr7:138159400-138165400	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr7:138160200-138175000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr7:138160600-138168400	Weak transcription	Gastric	stomach
17	chr7:138160600-138182200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr7:138161200-138165400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr7:138161400-138164400	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr7:138161400-138164400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr7:138161800-138165000	Enhancers	Stomach Mucosa	stomach
22	chr7:138161800-138165000	Enhancers	HepG2	liver
23	chr7:138161800-138195800	Weak transcription	Fetal Brain Female	brain
24	chr7:138162000-138175200	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr7:138162200-138164400	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr7:138162400-138165400	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr7:138163000-138164400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr7:138163400-138164400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr7:138163400-138165800	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr7:138163600-138164600	Weak transcription	Fetal Intestine Small	intestine
31	chr7:138163600-138165000	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr7:138163600-138165000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr7:138163600-138166200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr7:138163600-138168200	Weak transcription	Primary B cells from peripheral blood	blood
35	chr7:138163600-138168600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr7:138163600-138183400	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr7:138163600-138184000	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr7:138163600-138184200	Weak transcription	Aorta	Aorta
39	chr7:138163600-138184200	Weak transcription	Fetal Thymus	thymus
40	chr7:138163800-138164400	Enhancers	Duodenum Mucosa	Duodenum
41	chr7:138163800-138164400	Enhancers	GM12878-XiMat	blood
42	chr7:138163800-138165000	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr7:138163800-138166200	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr7:138163800-138166200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr7:138163800-138168200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr7:138163800-138175400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr7:138164000-138164800	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr7:138164000-138165000	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr7:138164000-138165000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr7:138164000-138165200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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