Variant report

Variant	rs539746502
Chromosome Location	chr6:81258138-81258139
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv886312	chr6:81166178-81309481	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv463908	chr6:81232993-81287675	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv604054	chr6:81232993-81287675	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv998220	chr6:81258085-81298829	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81251400-81259000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:81251800-81260600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:81256800-81259000	Enhancers	HMEC	breast
4	chr6:81256800-81259200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:81256800-81259200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:81257000-81259400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:81257400-81259000	Enhancers	NHEK	skin
8	chr6:81257600-81258400	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr6:81257600-81258400	Enhancers	Fetal Stomach	stomach
10	chr6:81257600-81258600	Enhancers	NH-A	brain
11	chr6:81257600-81259000	Enhancers	Hela-S3	cervix
12	chr6:81257600-81259200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:81257800-81258400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:81257800-81258400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
15	chr6:81257800-81258400	Flanking Active TSS	NHDF-Ad	bronchial
16	chr6:81257800-81258400	Flanking Active TSS	Osteobl	bone
17	chr6:81257800-81258600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:81257800-81258600	Flanking Active TSS	HSMMtube	muscle
19	chr6:81257800-81259400	Enhancers	Placenta Amnion	Placenta Amnion
20	chr6:81258000-81258200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:81258000-81258200	Enhancers	NHLF	lung
22	chr6:81258000-81258400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:81258000-81258400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:81258000-81258400	Flanking Active TSS	HSMM	muscle
25	chr6:81258000-81258600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr6:81258000-81259200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links