Variant report

Variant	rs539778038
Chromosome Location	chr11:59962545-59962546
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468579	chr11:59814287-59975400	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv555150	chr11:59814287-59975400	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv832174	chr11:59909267-60073908	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3411552	chr11:59962126-59964224	Flanking Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv3322928	chr11:59962526-59963774	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59960200-59965000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:59960400-59962800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr11:59960400-59965400	Enhancers	Dnd41	blood
4	chr11:59961000-59963600	Enhancers	Fetal Intestine Large	intestine
5	chr11:59961000-59963800	Enhancers	Primary B cells from cord blood	blood
6	chr11:59961000-59965000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr11:59961200-59962800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr11:59961200-59963600	Enhancers	Fetal Intestine Small	intestine
9	chr11:59961600-59963600	Enhancers	Primary hematopoietic stem cells	blood
10	chr11:59961600-59963600	Enhancers	Ovary	ovary
11	chr11:59961800-59962600	Flanking Active TSS	K562	blood
12	chr11:59962000-59962600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:59962200-59965000	Enhancers	HUVEC	blood vessel
14	chr11:59962400-59963200	Enhancers	GM12878-XiMat	blood
15	chr11:59962400-59963400	Weak transcription	Primary B cells from peripheral blood	blood
16	chr11:59962400-59963400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr11:59962400-59963400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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